View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_low_17 (Length: 227)
Name: NF19724_low_17
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_low_17 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 10638 - 10838
Alignment:
| Q |
14 |
ttattctgtcaaagtttcatgtctctctttcatcaagttactgtcattcaccggccactcgcttgcttacagaacctggtcatggagttgttctcaaaat |
113 |
Q |
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| T |
10638 |
ttattctgtcaaagtttcatgtctctctttcatcaagttactgtcattcaccggccattcgcttgcttacagaacctggtcatggagttgttctcaaaat |
10737 |
T |
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| Q |
114 |
gacaagagtttaaacaacaatgtaattaaaatacttctcccgttgttcattaggtttcctttttcattttccttgtgaaggttactattatagtaataat |
213 |
Q |
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| T |
10738 |
gacaagagtttaagcaacaatgtaattaaaatacttctcccgttgttcgttaggtttcctttttcattttccttgtgaaggttactattatagtaataat |
10837 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
10838 |
t |
10838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 19208383 - 19208549
Alignment:
| Q |
19 |
ctgtcaaagtttcatgtctctctttcatcaagttactgtcattcaccggccactcgcttgcttacagaacctggtcatggagttgttctcaaaatgacaa |
118 |
Q |
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| T |
19208383 |
ctgtcaaagtttcgcgtctctctttcgtcaagttactgtcattcaccggcctttcgtttgctgatagaacctggtcatggagttgttctcaatatgacaa |
19208482 |
T |
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| Q |
119 |
gagttta----aacaacaatgtaattaaaatacttctcccgttgttcattaggtttcctttttcatt |
181 |
Q |
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| T |
19208483 |
gaatttagttgagcaacaatttaactaaaatgattttccccttgttcattggggttcctttttcatt |
19208549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 25197847 - 25197949
Alignment:
| Q |
16 |
attctgtcaaagtttcatgtctctctttcatcaagttactgtcattcaccggccactcgcttgcttacagaacctggtcatggagttgttctcaaaatga |
115 |
Q |
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|||||||||||||||| ||||||| || |||| |||||||||||||||| || ||| | |||| ||||||||||||| |||||||||||||||| |
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| T |
25197847 |
attctgtcaaagtttcgattctctctgtcgtcaacttactgtcattcaccgacccttcgtatacttattgaacctggtcatgatgttgttctcaaaatga |
25197946 |
T |
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| Q |
116 |
caa |
118 |
Q |
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| T |
25197947 |
caa |
25197949 |
T |
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