View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_low_2 (Length: 709)
Name: NF19724_low_2
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_low_2 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 689; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 1 - 709
Target Start/End: Original strand, 41811615 - 41812323
Alignment:
| Q |
1 |
aggccctcacaaaggttgacaatgaaaagaatgaattagccaacaaatacctagatcttttgagaatattggaagaacgggatgaagaatataaacacgt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811615 |
aggccctcacaaaggttgacaatgaaaataatgaattagccaacaaatacctagatcttttgagaatattggaagaacgggatgaagaatataaacacgt |
41811714 |
T |
|
| Q |
101 |
tgatagttggtataatgactgtcaggtcaaacttaaacgtgcggagtggaagatgagaaaaatggcagaaatgtttcttgaagacattgattcaaaagat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811715 |
tgatagttggtatagtgactgtcaggtcaaacttaaacgtgcggagtggaagatgagaaaaatggcagaaatgtttcttgaagacattgattcaaaagat |
41811814 |
T |
|
| Q |
201 |
cagatggtagctgatttggaacaccaagttgaagaactgaaaagagacctggaagagaaaggagatgaggtcagctctttgcttgaaaatgtcatgaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811815 |
cagatggtagctgatttggaacaccaagttgaagaactgaaaagagacctggaagagaaaggagatgaggtcagctctttgcttgaaaatgtcatgaatc |
41811914 |
T |
|
| Q |
301 |
ttgaggtaaagctttgcctgtcaaaccaagaggaagagagctttagaaagttggaagagaagtttcagcaagttcagagagcacttgaagacaggattgc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811915 |
ttgaggtaaagctttgcctgtcaaaccaagaggaagagagctttagaaaggtggaagaaaagtttcagcaagttcagagagcacttgaagacaggattgc |
41812014 |
T |
|
| Q |
401 |
tactgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggat |
500 |
Q |
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| T |
41812015 |
tactgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggat |
41812114 |
T |
|
| Q |
501 |
gactgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttac |
600 |
Q |
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| T |
41812115 |
gactgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttac |
41812214 |
T |
|
| Q |
601 |
agacagataaaaaccatttattggaggagttacagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaa |
700 |
Q |
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| T |
41812215 |
agacagataaaaaccatttattggaggagttgcagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaa |
41812314 |
T |
|
| Q |
701 |
ggaggaatc |
709 |
Q |
| |
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||||||||| |
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| T |
41812315 |
ggaggaatc |
41812323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 82 - 329
Target Start/End: Original strand, 41798426 - 41798673
Alignment:
| Q |
82 |
atgaagaatataaacacgttgatagttggtataatgactgtcaggtcaaacttaaacgtgcggagtggaagatgagaaaaatggcagaaatgtttcttga |
181 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| || ||||||||||| || ||| ||| |||| ||| | ||||||||||| ||||| ||| |
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| T |
41798426 |
atgaagaatataaacaaattgatagttggtttaatgaatggaaggtcaaacttgaagttgcagagaggaaaatggaagaaatggcagaagagtttcgtga |
41798525 |
T |
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| Q |
182 |
agacattgattcaaaagatcagatggtagctgatttggaacaccaagttgaagaactgaaaagagacctggaagagaaaggagatgaggtcagctctttg |
281 |
Q |
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|| ||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
41798526 |
aggcattgggtcaaaagatcagatggtaactgatttggaaaaccaagttgaagacctgaaaagagacctggaagagaaaggagatgaggttagcactttg |
41798625 |
T |
|
| Q |
282 |
cttgaaaatgtcatgaatcttgaggtaaagctttgcctgtcaaaccaa |
329 |
Q |
| |
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|||| ||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
41798626 |
tttgagaatgtcaggaatcttgaggtaaagcttcgcctgtcaaaccaa |
41798673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 406 - 709
Target Start/End: Original strand, 41798804 - 41799107
Alignment:
| Q |
406 |
acaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggatgactg |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| | ||| |||||||| || || | |
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| T |
41798804 |
acaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatactttgagccggaaattttccgacgaaag |
41798903 |
T |
|
| Q |
506 |
caataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttacagaca |
605 |
Q |
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||| ||| |||||||| ||| ||||||||||| | |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| | |
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| T |
41798904 |
caaaaatcatgagaactacatatcaaacatctcccatgagcttcaggttgcaaaagaatctgtcagcaagatgaatagggtgaaggggcagttacagaga |
41799003 |
T |
|
| Q |
606 |
gataaaaaccatttattggaggagttacagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaaggagg |
705 |
Q |
| |
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|||||| | ||| || ||||| | |||||||||||||||| || || ||||||| | || ||||||| |||||||||| |||||||||||||||| |
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| T |
41799004 |
gataaagattgtttgttagaggaactgcagggtaaaaaggaaggggaattaactctgagggaaaaggttgagaagctagaggtgaaggcaagaaaggagg |
41799103 |
T |
|
| Q |
706 |
aatc |
709 |
Q |
| |
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|||| |
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| T |
41799104 |
aatc |
41799107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 403 - 707
Target Start/End: Original strand, 41805194 - 41805490
Alignment:
| Q |
403 |
ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggatga |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||| || |||||| |||||| || |||| || |
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| T |
41805194 |
ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaatttttttgacat |
41805293 |
T |
|
| Q |
503 |
ctgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttacag |
602 |
Q |
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| ||| ||| |||||||||||||||| ||| |||||||||||| ||||||||| | ||||| |||||| | ||||||| ||||||||||| |
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| T |
41805294 |
ccacaaaaatattgagaaccgcatctca-------cat--gagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaagaggcagttacag |
41805384 |
T |
|
| Q |
603 |
acagataaaa-accatttattggaggagttacagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaag |
701 |
Q |
| |
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|||||||||| ||||||| ||||||||| | |||||||||| |||||||| || ||||||| | || |||||||||||||||||||||||||||||||| |
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| T |
41805385 |
acagataaaaaaccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaag |
41805484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 148 - 329
Target Start/End: Original strand, 41804885 - 41805066
Alignment:
| Q |
148 |
ggaagatgagaaaaatggcagaaatgtttcttgaagacattgattcaaaagatcagatggtagctgatttggaacaccaagttgaagaactgaaaagaga |
247 |
Q |
| |
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|||||||| || |||||| ||| ||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
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| T |
41804885 |
ggaagatggaaataatggcggaagagtttcttcaaggcattgggtcaaaagatcagatggttgctgatttggaacaccaagttgaagacctgaaaaaaga |
41804984 |
T |
|
| Q |
248 |
cctggaagagaaaggagatgaggtcagctctttgcttgaaaatgtcatgaatcttgaggtaaagctttgcctgtcaaaccaa |
329 |
Q |
| |
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|||||| |||||||| || | ||| || ||||||||| |||||| |||||||| || ||||||| || ||||||||||| |
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| T |
41804985 |
cctggacaagaaaggaaataacatcacctttttgcttgagaatgtcgagaatcttggggaaaagcttcgcttgtcaaaccaa |
41805066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 41798708 - 41798781
Alignment:
| Q |
331 |
aggaagagagctttagaaagttggaa-gagaagtttcagcaagttcagagagcacttgaagacaggattgctact |
404 |
Q |
| |
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|||||||||||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41798708 |
aggaagagagctttagaaaggcggaacgaga-gtttcagcaagttcagagagaacttgaagacaggattgctact |
41798781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 41798328 - 41798401
Alignment:
| Q |
5 |
cctcacaaaggttgacaatgaaaagaatgaattagccaacaaatacctagatcttttgagaatattggaagaac |
78 |
Q |
| |
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||||| || |||||||||||||||||||||||||||| ||||| || | |||||| ||||| ||||||||||| |
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| T |
41798328 |
cctcagaatggttgacaatgaaaagaatgaattagcctacaaaaacatggatcttcagagaacattggaagaac |
41798401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 41804730 - 41804763
Alignment:
| Q |
14 |
ggttgacaatgaaaagaatgaattagccaacaaa |
47 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
41804730 |
ggttgacaatgaaaagaatgaattagccaacaaa |
41804763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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