View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_low_3 (Length: 629)
Name: NF19724_low_3
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 119 - 614
Target Start/End: Original strand, 40834351 - 40834845
Alignment:
| Q |
119 |
gatgaaacacaataaaaatannnnnnnncaaaaaagctatgacaaacatgctcttaaatagtccaaaatttaacttttgaaagaggtaaataaaatatca |
218 |
Q |
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| T |
40834351 |
gatgaaacacaataaaaatattttttttcaaaaaagctatgacaaacatgctcttaaatagtccaaaatttaacttttgaaagaggtaaataaaatatca |
40834450 |
T |
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| Q |
219 |
tttgaaaataaactttgaaacacgannnnnnnnnaggnnnnnnnnntacaaataaaattgtttctgatttactagcaaaaatatggggtgtgaataaaag |
318 |
Q |
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| T |
40834451 |
tttgaaaataaactttcaaacacgattttttttaggaaaaaaaaaatacaaataaaattgtttctgatttactagcaaaaatatggggtgtgaataaaag |
40834550 |
T |
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| Q |
319 |
ccctcaatgtggtgatatgtattggagtaaaggtggaggcgcaagattcatgggctgcatgtaacttgtttgctgtttattaagnnnnnnnagaatttct |
418 |
Q |
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| T |
40834551 |
ccctcaatgtggtgatatgtat-ggagtaaaggtggaggcgcaagattcatgggctgcatgtaacttgtttgctgtttattaagtttttttagaatttct |
40834649 |
T |
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| Q |
419 |
tatcgtacccttcgcccattcctcttgcacacccactgaaattctcattttaccgcgtttggattttataatccgaacggtaatagtactattttgtatt |
518 |
Q |
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| T |
40834650 |
tatcgtacccttcgcccattcctcttgcacacccactgaaattctcattttaccgtgtttggattttataatccgaacggtaatattactattttgtatt |
40834749 |
T |
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| Q |
519 |
atagaattcgaaatcgttgagacttcagaaagcaacacaaaatgaaactttaacagttattccacaaaagacaacatccatacaacaacatatttc |
614 |
Q |
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| T |
40834750 |
atagaattcgaaattgttgagacttcagaaagcaacacaaaatgaaactttaacagttattccacaaaagacaacattcatacaacaacatatttc |
40834845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 40834278 - 40834316
Alignment:
| Q |
15 |
agagagtatttaaactaatttctcatttgaagttttctt |
53 |
Q |
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| T |
40834278 |
agagagtatttaaactaatttctcatttgaagttttctt |
40834316 |
T |
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