View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19724_low_7 (Length: 402)
Name: NF19724_low_7
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19724_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 47416530 - 47416919
Alignment:
| Q |
16 |
aaagaatgaaaccccctaattttagagaactcaaaaaataaattgggggaggactctgttaaggttt---------------aatttctcaagtcannnn |
100 |
Q |
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| T |
47416530 |
aaagattgaaaccccctaattttagagaactcaaaaaataaattgggggaggactctgttaaggttttggaaggctttgaaaaatttctcaagtcatttt |
47416629 |
T |
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| Q |
101 |
nnnnnnnnnatgatattctcagcaaagaaaatattagtcataagtccctctcctcccctccaaaaacactctcaaacaaggtggggcttcccctctcatt |
200 |
Q |
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| T |
47416630 |
cccttttttatgatattctcagcaaagaaaatattagtcataagtccctctcctcccctccaaaaacactctcaaacaaggtggggcttcccctctcatt |
47416729 |
T |
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| Q |
201 |
ccctcctctcctaacacccaaacaaagtctaaaggttatatgtaatttcttacatgccttaagagaccaacctgaagatcctgctgtatcgatgtgatta |
300 |
Q |
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| T |
47416730 |
ccctcctctcctaacacccgaacaaagtctaaaggttatatgtaatttcttacatgccgtaagagaccaacctgaagatcctgctgtatcgacgtgatta |
47416829 |
T |
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| Q |
301 |
atattaatatccagtagttgagttggttattagaactggcatttctagttacgacatcagtataggacatagcttctttacttcctctct |
390 |
Q |
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| T |
47416830 |
atattaatatccagtagttgagttggttattagaactggcatttctagttacgacatcagtataggacatagcttctttacttcctctct |
47416919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 4803233 - 4803151
Alignment:
| Q |
308 |
tatccagtagttgagttggttattagaactggcatttctagttacgacatcagtataggacatagcttctttacttcctctct |
390 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4803233 |
tatccagtagttaagtttgttattagaactggcatttctagttacgacatcagtataggacatagcttctttacttcctctct |
4803151 |
T |
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