View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19724_low_8 (Length: 371)

Name: NF19724_low_8
Description: NF19724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19724_low_8
NF19724_low_8
[»] chr5 (3 HSPs)
chr5 (18-218)||(40531688-40531888)
chr5 (18-215)||(40536659-40536853)
chr5 (296-357)||(40531543-40531604)
[»] chr7 (2 HSPs)
chr7 (46-218)||(19430698-19430867)
chr7 (296-357)||(19430571-19430632)
[»] chr2 (2 HSPs)
chr2 (44-218)||(19149640-19149811)
chr2 (296-357)||(19149531-19149592)
[»] chr3 (1 HSPs)
chr3 (19-111)||(20501115-20501207)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 40531888 - 40531688
Alignment:
Q  18 tcaatccagttgaattctcagtacaaagataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40531888 tcaatccagttgaattctcagtacaaagataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattg 40531789  T
Q  118 tttaccaagaattgcgtttgtatttggtcttcgaacaattggttttggacttcggggggcatgtttgtttggtgattggtaaggttgttgagaaggggtt 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40531788 tttaccaagaattgcgtttgtatttggtctttgaacaattggttttggacttcggggggcatgtttgtttggtgattggtaaggttgttgagaaggggtt 40531689  T
Q  218 t 218  Q
    |    
T  40531688 t 40531688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 40536853 - 40536659
Alignment:
Q  18 tcaatccagttgaattctcagtacaaagataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattg 117  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40536853 tcaatccagttgaattctcagtacaaaggtaagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattg 40536754  T
Q  118 tttaccaagaattgcgtttgtatttggtcttcgaacaattggttttggacttcggggggcatgtttgtttggtgattggtaaggttgttgagaagggg 215  Q
    ||||||  |||||| |||||||| ||  |||  |||| ||||||||||||||   || |||||||| | |||| ||||||||||||||||| ||||||    
T  40536753 tttacctggaattgtgtttgtatctgaccttttaacagttggttttggactt---ggtgcatgtttatctggtaattggtaaggttgttgaaaagggg 40536659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 40531604 - 40531543
Alignment:
Q  296 ataccagaaacaccaacgtgtctatgatctggctttgattcctttttactcaaacaaccacc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40531604 ataccagaaacaccaacgtgtctatgatctggctttgattcctttttactcaaacaaccacc 40531543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 19430867 - 19430698
Alignment:
Q  46 ataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaagaattgcgtttgtatttggt 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |    
T  19430867 ataagtcacaccaaattgccctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaagaattgtttttgtatttgat 19430768  T
Q  146 cttcgaacaattggttttggacttcggggggcatgtttgtttggtgattggtaaggttgttgagaaggggttt 218  Q
    ||| || |||||||||||||||||   |||| ||||||||||||||||||||||||||||||| |||||||||    
T  19430767 ctttgagcaattggttttggactt---ggggtatgtttgtttggtgattggtaaggttgttgaaaaggggttt 19430698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 19430632 - 19430571
Alignment:
Q  296 ataccagaaacaccaacgtgtctatgatctggctttgattcctttttactcaaacaaccacc 357  Q
    |||| |||||||||||| |||||||||||||||| | ||||||||||||  |||||| ||||    
T  19430632 atacaagaaacaccaacatgtctatgatctggctctcattcctttttacaaaaacaatcacc 19430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 19149811 - 19149640
Alignment:
Q  44 agataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaagaattgcgtttgtatttg 143  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  19149811 agataagtcacaccaaattgccctcttcctaattctttcccaactgtgtaaatttgtttcacatcttcaaattatttactaagaattgtgtttgtatttg 19149712  T
Q  144 gtcttcgaacaattggttttggacttcggggggcatgtttgtttggtgattggtaaggttgttgagaaggggttt 218  Q
     |||  || |||||||||||||||||   |||| ||||||||||||||||||||||||||||||| |||||||||    
T  19149711 atctctgagcaattggttttggactt---ggggtatgtttgtttggtgattggtaaggttgttgaaaaggggttt 19149640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 19149592 - 19149531
Alignment:
Q  296 ataccagaaacaccaacgtgtctatgatctggctttgattcctttttactcaaacaaccacc 357  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||||||||  |||||||||||    
T  19149592 ataccagaaacaccaacatgtttatgatctggctctgattcctttttacaaaaacaaccacc 19149531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 20501207 - 20501115
Alignment:
Q  19 caatccagttgaattctcagtacaaagataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttc 111  Q
    |||||||||||||||||| || || ||| | || || || ||||| ||||| ||||||||||| || |||||||| | |||||||||||||||    
T  20501207 caatccagttgaattctcggtgcatagaaacgttactccgaattggcctctacctaattctttacctagtgtgtagaattgtttcacatcttc 20501115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University