View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19725_high_11 (Length: 286)

Name: NF19725_high_11

Description: NF19725

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19725_high_11

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 173; E-Value: 5e-93

Query Start/End: Original strand, 17 - 282

Target Start/End: Complemental strand, 32420403 - 32420132

Alignment:

Q	17	cactatgggcatctggaattggagcatcacttgtagcttattcacgagttaaatctccaatgaagccaagtctaaggcttatccatgctaggtaaaattt	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32420403	cactatgggcatctggaattggagcatcacttgtagcttattcacgagttaaatctccaatgaagccaagtctaagacttatccatgctaggtaaaattt	32420304	T

Q	117	tcactacaat-----------------attttgttttccatttcaagtgctgaaatgtgtgttgtatcgaataaagtgtaacaaatgttttggtttgaag	199	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32420303	tcactacaatcttcgataataatttttattttgttttccatttcaagtgct-----------tgtatcgaataaagtgtaacgaatgttttggtttgaag	32420215	T

Q	200	gatgcatgcacaggcgctaactctagcagtgttgtcgggtgcagctgcttatcactattatgagaatcgtgatgatgtccatc	282	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	32420214	gatgcatgcacaggcgctaactctagcagtgttgtcgggtgcggctgcttatcactattatgagaatcgtgatgatgttcatc	32420132	T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 76 - 110

Target Start/End: Complemental strand, 36176355 - 36176321

Alignment:

Q	76	atgaagccaagtctaaggcttatccatgctaggta	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36176355	atgaagccaagtcttaggcttatccatgctaggta	36176321	T

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