View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_high_7 (Length: 400)
Name: NF19725_high_7
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 10075513 - 10075132
Alignment:
| Q |
1 |
agcaagaaagttcacttgcttcagtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaacaatttgtacg |
100 |
Q |
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| T |
10075513 |
agcaagaaagtgcacttgcttcagtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttctctgcaaataaaacaatttgtacg |
10075414 |
T |
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| Q |
101 |
atgttagattctagagctaggtaacaaaatgctaatcaacgttgaactaacatgtttccaagatgttagattctagagctaggcacaagtcttatataaa |
200 |
Q |
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| T |
10075413 |
atgttagattctagagctaggtaacaaaatgctaatcaacgttgaactaacatgtttccaagatgttagattctagagctaggcacaagtcttatataaa |
10075314 |
T |
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| Q |
201 |
tagcccttaaaatctattaaccaatttagacttgtttaagaatctgaaacatttaaactnnnnnnnggtgaacacattctgataaatatactagcaagac |
300 |
Q |
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| T |
10075313 |
tagcccttaaaatctattatccaatttagacttgtttaagagtctgaaacatttaaactaaaaaaaggtgaacacattctgatatatatactagcaagac |
10075214 |
T |
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| Q |
301 |
tttcatcactcatttgtcagaattgcaaaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaaga |
382 |
Q |
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| T |
10075213 |
tttcatcactcatttgtcagaattgcaaaaattgaaatggcgttaatagcgacaagaagaaactcacgtcagatacagaaga |
10075132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 10262088 - 10262140
Alignment:
| Q |
24 |
gtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttg |
76 |
Q |
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| T |
10262088 |
gtatcttcaacttgagagtgaaatacgaaacttggaaatgtagttgtgatttg |
10262140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 10259864 - 10259813
Alignment:
| Q |
24 |
gtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgattt |
75 |
Q |
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| T |
10259864 |
gtatcttcaacttgagagtgaaatacgaaactaggaaatgtagttgtgattt |
10259813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 10064510 - 10064422
Alignment:
| Q |
286 |
atatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggttttaatagcgacaagcagaaactcacgtgagata |
375 |
Q |
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| T |
10064510 |
atatacttgcaaggctttcatccctgattgaccagaatagcaaaa-ttgaaatggtgttaatagcaacaagaagaaactcacgtgagata |
10064422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 10033021 - 10032915
Alignment:
| Q |
30 |
tcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaacaatttgtacgatgttagattctagagctaggtaacaaaa |
129 |
Q |
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| T |
10033021 |
tcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctctgcaaacaaa-caatttgagagatgttagattgtaaagcttggtaacaaaa |
10032923 |
T |
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| Q |
130 |
tgctaatc |
137 |
Q |
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| T |
10032922 |
tgctaatc |
10032915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 10054380 - 10054333
Alignment:
| Q |
328 |
aaaattgaaatggttttaatagcgacaagcagaaactcacgtgagata |
375 |
Q |
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| T |
10054380 |
aaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagata |
10054333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 10054933 - 10054827
Alignment:
| Q |
30 |
tcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaacaatttgtacgatgttagattctagagctaggtaacaaaa |
129 |
Q |
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| T |
10054933 |
tcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctctgcaaacaaa-caatttgagagatgttagattgtaaagcttggtaacaaaa |
10054835 |
T |
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| Q |
130 |
tgctaatc |
137 |
Q |
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|||||||| |
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| T |
10054834 |
tgctaatc |
10054827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 10032468 - 10032421
Alignment:
| Q |
328 |
aaaattgaaatggttttaatagcgacaagcagaaactcacgtgagata |
375 |
Q |
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| T |
10032468 |
aaaattgaaatggtgttaatagcaacaagaagacactcacgtgagata |
10032421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 10064855 - 10064791
Alignment:
| Q |
25 |
tatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaa |
89 |
Q |
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|||| |||||||| | |||||||| ||| ||||||||| ||||||||||| |||||||| |||| |
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| T |
10064855 |
tatcatcaacttgcgtgtgaaatatgaaactgggaaatgcagttgtgatttctctgcaaaaaaaa |
10064791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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