View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_high_8 (Length: 391)
Name: NF19725_high_8
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 45108571 - 45108829
Alignment:
| Q |
4 |
atatacacctttcatattctacaggatgcagattatgtagtgaactgaaattgagactctctacacacgaatgtgcagtatgatgatgaagagacacaca |
103 |
Q |
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| T |
45108571 |
atataaacctttcatattctacaggatgcagattatgtagtgaactgaaattgagactctctacacacgaatgtgcagtatgatgatgaagagacacaca |
45108670 |
T |
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| Q |
104 |
ataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagatttacaaaaagatctgggttccca |
203 |
Q |
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| T |
45108671 |
ataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagatttacaaaaagatctgggctccca |
45108770 |
T |
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| Q |
204 |
tgctacaaaacaagttcaattctacatacttcagagggcaaggtaattacgtgtttgtg |
262 |
Q |
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| T |
45108771 |
tgctacaaaacaagttcaattctacatacttcagagggcaaggtaattacgtgtttgtg |
45108829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 45125672 - 45125832
Alignment:
| Q |
81 |
gtatgatgatgaagagacacacaataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagat |
180 |
Q |
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| T |
45125672 |
gtatgatgatgaagagccacaca------ttcctaaggatcatttttctttttatgtttcttggatggctaacagtttggatcttgttgcccacaaaggt |
45125765 |
T |
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| Q |
181 |
ttacaaaaagatctgggttcccatgctacaaaacaagttcaattctacatacttcagagggcaaggt |
247 |
Q |
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| T |
45125766 |
ctacaaaaacacatggactcccaagctagaaatcaagctcaattctacatactttagagagcaaggt |
45125832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 45108893 - 45108946
Alignment:
| Q |
328 |
cagtagttcttaactttattagggataaatctcctgtttttcacattccctatg |
381 |
Q |
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| T |
45108893 |
cagtagttcttaactttattagggataaatctcctgtttttcacattccctatg |
45108946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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