View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19725_low_1 (Length: 731)

Name: NF19725_low_1
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19725_low_1
NF19725_low_1
[»] chr1 (12 HSPs)
chr1 (19-716)||(33160221-33160937)
chr1 (425-609)||(29658752-29658936)
chr1 (425-609)||(29718779-29718963)
chr1 (495-715)||(30827305-30827527)
chr1 (488-609)||(29691267-29691388)
chr1 (641-715)||(29658623-29658697)
chr1 (641-715)||(29691138-29691212)
chr1 (641-715)||(29718650-29718724)
chr1 (32-142)||(29719514-29719623)
chr1 (296-420)||(29659189-29659323)
chr1 (366-420)||(29719216-29719270)
chr1 (34-142)||(29659551-29659658)
[»] chr6 (18 HSPs)
chr6 (500-609)||(6594396-6594505)
chr6 (653-716)||(6602874-6602937)
chr6 (273-339)||(6426279-6426345)
chr6 (646-716)||(7993851-7993921)
chr6 (647-716)||(6426854-6426923)
chr6 (272-371)||(7442584-7442677)
chr6 (273-376)||(6394611-6394710)
chr6 (654-716)||(6594272-6594334)
chr6 (283-331)||(6589617-6589665)
chr6 (279-339)||(6597184-6597244)
chr6 (276-331)||(14820443-14820498)
chr6 (642-716)||(7131973-7132047)
chr6 (501-607)||(7993974-7994080)
chr6 (276-331)||(14818165-14818220)
chr6 (653-716)||(19632785-19632848)
chr6 (289-339)||(6594884-6594934)
chr6 (666-703)||(6423597-6423634)
chr6 (653-714)||(10579426-10579487)
[»] chr7 (5 HSPs)
chr7 (273-376)||(15092404-15092503)
chr7 (272-339)||(10170311-10170378)
chr7 (272-339)||(10177836-10177903)
chr7 (19-105)||(10170479-10170564)
chr7 (19-105)||(10178004-10178089)
[»] chr5 (1 HSPs)
chr5 (642-716)||(20477751-20477825)
[»] chr8 (1 HSPs)
chr8 (641-712)||(17627729-17627800)
[»] chr4 (4 HSPs)
chr4 (648-691)||(10634128-10634171)
chr4 (653-703)||(53761467-53761517)
chr4 (495-631)||(10634202-10634338)
chr4 (641-682)||(3438352-3438393)
[»] chr3 (1 HSPs)
chr3 (656-703)||(514407-514454)


Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 19 - 716
Target Start/End: Original strand, 33160221 - 33160937
Alignment:
Q  19 caagatacattggttttgaattctcaaggcaaatatgttcaacctaagcaaaatatattatttttgttatattcacttggtaacttctataaatttcatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160221 caagatacattggttttgaattctcaaggcaaatatgttcaacctaagcaaaatatattatttttgttatattcacttggtaacttctataaatttcatt 33160320  T
Q  119 tctgcacaaaagagtgttaaaggcgaactaaacagttgagaattgttttatgaatcagttctaacaataagattagcagtcatttcaagaacagatgcca 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33160321 tctgcacaaaagagtgttaaaggcgaactaaacagttaagaattgttttatgtatcagttctaacaataagattagcagtcatttcaagaacagatgcca 33160420  T
Q  219 agttacgtacacttaaaaagaaaaagcagtaacttccagatgagtaaatgcacttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagca 318  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160421 agttacgtacacttaaaaagaaaaagcggtagcttccggatgagtaaatgcacttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagca 33160520  T
Q  319 aaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactagcaaacaaaacatccatgacg-----atgcaagaagactttcttctt 413  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  33160521 aaaacaacttacaaagttcaatgaaacttgagcatagcactttcataatactagcaaacaaaacatccatgacgatgcaatgcaagaagactttcttctt 33160620  T
Q  414 tctgtcagtataagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcac 513  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160621 tctgtcactataagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcac 33160720  T
Q  514 ctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttacttca 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160721 ctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttacttca 33160820  T
Q  614 aagtccgtcaaagaattatcatgctct--------------aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaa 699  Q
    |||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160821 aagtccgtcaaagaattatcatgctctatactctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaa 33160920  T
Q  700 acaatgctgattctgtg 716  Q
    |||||||||||||||||    
T  33160921 acaatgctgattctgtg 33160937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 425 - 609
Target Start/End: Complemental strand, 29658936 - 29658752
Alignment:
Q  425 aagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctccaaattgg 524  Q
    |||||||||| ||||||||||||||||||| ||||||| |||  |||| |||||| ||||| ||||||| ||||||||||||||||||| ||||| ||||    
T  29658936 aagttcaaatgcttaatcttactacaacattttaaaacttgagaaatagtttcttcagatacgtccttccaatagctcaaatcaagcacttccaagttgg 29658837  T
Q  525 ggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttac 609  Q
    |||| ||| ||| |||||||| |||||||| |||||||||||  ||||||   |||||| |||||||||||| ||  ||||||||    
T  29658836 ggaaaatggaagcaaacaatatgatgttttgatctctcaagtattgacagcgagccaaacaaagagactttactttcgggcttac 29658752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 609
Target Start/End: Complemental strand, 29718963 - 29718779
Alignment:
Q  425 aagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctccaaattgg 524  Q
    |||||||||| |||||||||| |||||||||||||||| | |  || | |||||| ||| |  |||||| ||||||||||||||||||||||||| ||||    
T  29718963 aagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttccaatagctcaaatcaagcacctccaagttgg 29718864  T
Q  525 ggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttac 609  Q
    |||| ||| ||| ||||||||  ||||||| |||||||||||  ||||||   |||||| |||||||||||| ||  ||||||||    
T  29718863 ggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaagagactttactttcgggcttac 29718779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 495 - 715
Target Start/End: Original strand, 30827305 - 30827527
Alignment:
Q  495 aatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactt 594  Q
    |||||||||||||||||||||||||||||||||| ||  ||| |||||||| ||||||||||||||||||||  | |||| | |||||||||||||||||    
T  30827305 aatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaagtattaacagccagccaaagaaagagactt 30827404  T
Q  595 taattgagggcttact-tcaaagtccgtcaaagaattatcatgct--ctaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaac 691  Q
    |||||  |||||  || | | ||   |  |||||| ||||||  |  | ||||||||||    |||||||||||||| ||||||||||||| ||||||||    
T  30827405 taatttggggctgcctatgacagaa-gcaaaagaaatatcatctttcccaatagttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaac 30827503  T
Q  692 aagtgaaaacaatgctgattctgt 715  Q
     || |||||||| |||||||||||    
T  30827504 gagcgaaaacaaagctgattctgt 30827527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 488 - 609
Target Start/End: Complemental strand, 29691388 - 29691267
Alignment:
Q  488 tccttcgaatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaa 587  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||  ||||||| |||||||||||  ||||||   |||||| |||    
T  29691388 tccttccaatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaa 29691289  T
Q  588 gagactttaattgagggcttac 609  Q
    ||||||||| ||  ||||||||    
T  29691288 gagactttactttcgggcttac 29691267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 641 - 715
Target Start/End: Complemental strand, 29658697 - 29658623
Alignment:
Q  641 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgt 715  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| || |||||||| |||||||||||    
T  29658697 aatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29658623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 641 - 715
Target Start/End: Complemental strand, 29691212 - 29691138
Alignment:
Q  641 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgt 715  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| || |||||||| |||||||||||    
T  29691212 aatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29691138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 641 - 715
Target Start/End: Complemental strand, 29718724 - 29718650
Alignment:
Q  641 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgt 715  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| || |||||||| |||||||||||    
T  29718724 aatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29718650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 29719623 - 29719514
Alignment:
Q  32 ttttgaattctcaaggcaaatatgttcaacctaagcaaaatatatta-tttttgttatattcacttggtaacttctataaatttcatttctgcacaaaag 130  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||| ||||| |||| |||||  ||||| ||| | |||||||||    
T  29719623 ttttgaattttcaaggcaaatat-ttcaacctaagcaaaatataatattttttgttatatacacttagtaatttcta-caatttaattgcagcacaaaag 29719526  T
Q  131 agtgttaaaggc 142  Q
    ||||||| ||||    
T  29719525 agtgttacaggc 29719514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 296 - 420
Target Start/End: Complemental strand, 29659323 - 29659189
Alignment:
Q  296 tcagagaagtaaatcttaaagcaaaaacaa-cttacaaagttcaatgaaacttgagcatag----tactttcataatacta-----gcaaacaaaacatc 385  Q
    ||||||| |||||||||||| |||||| || ||||||||||||||| ||||||||||||||    || ||| | |||||||     |||||||| |||||    
T  29659323 tcagagaggtaaatcttaaaacaaaaaaaaacttacaaagttcaatcaaacttgagcatagcagttagtttgagaatactatactagcaaacaagacatc 29659224  T
Q  386 catgacgatgcaagaagactttcttctttctgtca 420  Q
     |||||| ||||||||||||||| |||||||||||    
T  29659223 aatgacgttgcaagaagactttcctctttctgtca 29659189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 29719270 - 29719216
Alignment:
Q  366 atactagcaaacaaaacatccatgacgatgcaagaagactttcttctttctgtca 420  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  29719270 atactagcaaacaagacatccatgacgttgcaagaagactttcctctttctgtca 29719216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 29659658 - 29659551
Alignment:
Q  34 ttgaattctcaaggcaaatatgttcaacctaagcaaaatatatta-tttttgttatattcacttggtaacttctataaatttcatttctgcacaaaagag 132  Q
    ||||||| ||||| ||||||| |||||||||||||||||||| || ||||| ||||||| |||| |||| || |||  |||| ||| |||||||||||||    
T  29659658 ttgaattttcaagtcaaatat-ttcaacctaagcaaaatataatattttttattatatttacttagtaatttatat-gatttaattgctgcacaaaagag 29659561  T
Q  133 tgttaaaggc 142  Q
    ||||| ||||    
T  29659560 tgttataggc 29659551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 609
Target Start/End: Complemental strand, 6594505 - 6594396
Alignment:
Q  500 ctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaatt 599  Q
    ||||||||||||| ||||||| ||||||| ||  ||| |||||||| ||||||||||||| ||||||||| ||||   |||||| |||||||||| ||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaagtgctcacagcgagccaaacaaagagacttcaatt 6594406  T
Q  600 gagggcttac 609  Q
    ||||| ||||    
T  6594405 gagggtttac 6594396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 653 - 716
Target Start/End: Complemental strand, 6602937 - 6602874
Alignment:
Q  653 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| | | ||||||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtg 6602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 6426279 - 6426345
Alignment:
Q  273 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 339  Q
    |||||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  6426279 tgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaa 6426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 646 - 716
Target Start/End: Complemental strand, 7993921 - 7993851
Alignment:
Q  646 ttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    |||||| |||||||||||| |||| |||||| ||||||||| |||| ||||||||||| ||||||||||||    
T  7993921 ttgtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtg 7993851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 647 - 716
Target Start/End: Original strand, 6426854 - 6426923
Alignment:
Q  647 tgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    ||||| ||||||||| || ||||||| ||||||||||||| |||||||||||||||||| || |||||||    
T  6426854 tgtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaatgttgtttctgtg 6426923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 7442677 - 7442584
Alignment:
Q  272 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatacta 371  Q
    ||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||  |||||| |||    ||| ||||| |||||||||||||||||    
T  7442677 ttgacatttaaaaaaactaatttctcaaagaaataaatcttaaaacaaaaacaactt--aaagtttaat----ctttagcatggtactttcataatacta 7442584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 6394611 - 6394710
Alignment:
Q  273 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactag 372  Q
    |||||||||||||| | |||||||||||||||||||| || || |||||| ||||||||  ||||    |||||| ||||||| | ||||| ||||||||    
T  6394611 tgacattttaaaaaggaaatttctcagagaagtaaatgttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatactag 6394706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 654 - 716
Target Start/End: Complemental strand, 6594334 - 6594272
Alignment:
Q  654 tccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    ||||||||||| ||||||||| |||||||  || |||||||||||||||| ||||||||||||    
T  6594334 tccattttgatatcactaagtaaaggacaacttctaacaagtgaaaacaaagctgattctgtg 6594272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 6589665 - 6589617
Alignment:
Q  283 aaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 331  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  6589665 aaaaagtaatttctcagagaagtgaatattaaaacaaaaacaacttaca 6589617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 6597244 - 6597184
Alignment:
Q  279 tttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 339  Q
    ||||||||| |||||||||||| |||||||| ||||| ||||||||||| ||| |||||||    
T  6597244 tttaaaaaactaatttctcagaaaagtaaattttaaaacaaaaacaactgacagagttcaa 6597184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 14820443 - 14820498
Alignment:
Q  276 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 331  Q
    ||||||||||| | || |||||||||| |||||||||||| |||||||||||||||    
T  14820443 cattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaacttaca 14820498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 716
Target Start/End: Original strand, 7131973 - 7132047
Alignment:
Q  642 atagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    |||| |||| ||||||||||||  |||||||||||||| |||||| |||| |||||| |||| ||| ||||||||    
T  7131973 atagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtg 7132047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 501 - 607
Target Start/End: Complemental strand, 7994080 - 7993974
Alignment:
Q  501 tcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattg 600  Q
    ||||||| |||| || |||||| ||||| |||  || |||||||| ||||||| |||||||||| || ||||||   || ||| |||||||||| |||||    
T  7994080 tcaaatcgagcatctgcaaatttgggaaaatggtagcaaacaatatgatgtttgcatctctcaactgttgacagagagctaaacaaagagacttcaattg 7993981  T
Q  601 agggctt 607  Q
    |||||||    
T  7993980 agggctt 7993974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 14818165 - 14818220
Alignment:
Q  276 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 331  Q
    ||||||||||| | || |||||| ||| |||||||||||| |||||||||||||||    
T  14818165 cattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaacttaca 14818220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 716
Target Start/End: Original strand, 19632785 - 19632848
Alignment:
Q  653 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    |||||||||||| ||||||||||||||||| ||  |||| || |||||||||| | ||||||||    
T  19632785 ttccattttgatctcactaagtgaaggacaattactaacgagcgaaaacaatgataattctgtg 19632848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 6594934 - 6594884
Alignment:
Q  289 taatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 339  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||    
T  6594934 taatttcgcagagaattaaatcttaaaacaaaagcaacttacaaaattcaa 6594884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 703
Target Start/End: Original strand, 6423597 - 6423634
Alignment:
Q  666 tcactaagtgaaggacagtttgtaacaagtgaaaacaa 703  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  6423597 tcactaagtgaaggacagtttctaacgagtgaaaacaa 6423634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 714
Target Start/End: Complemental strand, 10579487 - 10579426
Alignment:
Q  653 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctg 714  Q
    |||||||||||| |||||||| |||||||| ||| | || || |||||||| ||||||||||    
T  10579487 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctg 10579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 376
Target Start/End: Complemental strand, 15092503 - 15092404
Alignment:
Q  273 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactag 372  Q
    |||||||||||||| | ||||||||||||||||||||||| || |||||| ||||||||  ||||    |||||| ||||||| | ||||| ||||||||    
T  15092503 tgacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatactag 15092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 10170378 - 10170311
Alignment:
Q  272 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 339  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| ||||||| ||||||| |||||||    
T  10170378 ttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaa 10170311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 10177903 - 10177836
Alignment:
Q  272 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 339  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| ||||||| ||||||| |||||||    
T  10177903 ttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaa 10177836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 10170564 - 10170479
Alignment:
Q  19 caagatacattggttttgaattctcaaggcaaatatgttcaacctaagcaaaatatattatttttgttatattcacttggtaacttc 105  Q
    |||||||| |||||||||| ||| || |  | |||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  10170564 caagatactttggttttgagttcacatgtaagatat-ttcaagctaagaaaaatacattatttttgttatattcacttggtaacttc 10170479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 10178089 - 10178004
Alignment:
Q  19 caagatacattggttttgaattctcaaggcaaatatgttcaacctaagcaaaatatattatttttgttatattcacttggtaacttc 105  Q
    |||||||| |||||||||| ||| || |  | |||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  10178089 caagatactttggttttgagttcacatgtaagatat-ttcaagctaagaaaaatacattatttttgttatattcacttggtaacttc 10178004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 716
Target Start/End: Complemental strand, 20477825 - 20477751
Alignment:
Q  642 atagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 716  Q
    |||| |||| ||||||||||||| |||| |||||||||||||||| |||| |||||| |||| ||| ||||||||    
T  20477825 atagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtg 20477751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 641 - 712
Target Start/End: Complemental strand, 17627800 - 17627729
Alignment:
Q  641 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattc 712  Q
    ||||| ||||||||||||||| || ||| ||||||||||||| ||  |||| ||||||||||| ||||||||    
T  17627800 aatagatgtgcattccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattc 17627729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 648 - 691
Target Start/End: Complemental strand, 10634171 - 10634128
Alignment:
Q  648 gtgcattccattttgatgtcactaagtgaaggacagtttgtaac 691  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||    
T  10634171 gtgcattccattttgatctcactaagtgaaggacagtttctaac 10634128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 703
Target Start/End: Complemental strand, 53761517 - 53761467
Alignment:
Q  653 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaa 703  Q
    |||||||||||| ||||||||||||||||||||| || |||||| ||||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttagcaagtgcaaacaa 53761467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 631
Target Start/End: Complemental strand, 10634338 - 10634202
Alignment:
Q  495 aatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactt 594  Q
    |||| |||||||| ||||| ||||| ||||| || ||| ||| |||||| | ||||| |||||||| |||  ||| |||||  |||||| ||||||||||    
T  10634338 aataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctcccaacagctcacagtgagccaaacaaagagactt 10634239  T
Q  595 taattgagggcttacttcaaagtccgtcaaagaatta 631  Q
     | |||||| ||| |  |||| ||| |||||||||||    
T  10634238 aagttgaggtcttccaacaaaatccctcaaagaatta 10634202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 682
Target Start/End: Complemental strand, 3438393 - 3438352
Alignment:
Q  641 aatagttgtgcattccattttgatgtcactaagtgaaggaca 682  Q
    ||||| ||||||||||||||| || |||||||||||||||||    
T  3438393 aatagatgtgcattccatttttatctcactaagtgaaggaca 3438352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 703
Target Start/End: Complemental strand, 514454 - 514407
Alignment:
Q  656 cattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaa 703  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaa 514407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University