View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19725_low_10 (Length: 354)
Name: NF19725_low_10
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 165 - 337
Target Start/End: Complemental strand, 8704877 - 8704712
Alignment:
| Q |
165 |
catatgaagagaaagtggtgattgttcagagttcagaagctaaagcatgaatttgtaatggtggaaatagggaatagtatgtgtgagagttttgaggttg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8704877 |
catatgaagagaaagtggtgattgttcagagttcagaagctaaagcatgaatttgtaatggtggaaatag-------tatgtgtgagagttttgaggttg |
8704785 |
T |
|
| Q |
265 |
atcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaactgtctagtact |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8704784 |
atcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaattgtctagtact |
8704712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 8705027 - 8704948
Alignment:
| Q |
19 |
cttcatctgttggtcggaatctgaatccaacaggaacatggtcaagagtcggaggaaataaggttgtcattgactgcttc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705027 |
cttcatctgttggtcggaatctgaatccaacaggaacatggtcaagagtcggaggaaataaggttgtcattgactgcttc |
8704948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 14372551 - 14372638
Alignment:
| Q |
254 |
ttttgaggttgatcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaactgtctagtactacct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
14372551 |
ttttgaggttgatcataatatcataggctagttttggctttagctgaacaaaaacaaaacataggaaggaaactgtctactactacct |
14372638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 8690755 - 8690719
Alignment:
| Q |
19 |
cttcatctgttggtcggaatctgaatccaacaggaac |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690755 |
cttcatctgttggtcggaatctgaatccaacaggaac |
8690719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University