View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_low_11 (Length: 330)
Name: NF19725_low_11
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 46630728 - 46631040
Alignment:
| Q |
1 |
gcaactttcttataggtagttgcaacaatccatgttagtttactaggcacttgagagaaaagagatgggnnnnnnnggtaaatggctcaaaaatttcttg |
100 |
Q |
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| T |
46630728 |
gcaactttcttataggtagttgcaacaatccatgttagtttactaggcacttgagagaaaagagatgggaaaaaaaggtaaatggctcaaaaatttcttg |
46630827 |
T |
|
| Q |
101 |
acagggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacac |
200 |
Q |
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| T |
46630828 |
acagggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacac |
46630927 |
T |
|
| Q |
201 |
cctcaaaggagaagaagagatggagttttagaagatcatcagcaacagctacaccaacagcttccaaggaattgaataattctgaaattactgcttcaat |
300 |
Q |
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| T |
46630928 |
cctcaaaggagaagaagagatggagttttagaagatcatcagcaacagctacaccaacagcttccaaggaattgaataattctgaaattactgcttcaat |
46631027 |
T |
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| Q |
301 |
gacagtgcaaagt |
313 |
Q |
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||||||||||||| |
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| T |
46631028 |
gacagtgcaaagt |
46631040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 15505121 - 15505201
Alignment:
| Q |
160 |
aaatggaacagaaaatccaactactcctgtttcaacaacaccctcaaaggagaagaagagatggagttttagaagatcatcagc |
243 |
Q |
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||||||||| |||||||| |||||||| | ||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
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| T |
15505121 |
aaatggaactgaaaatcctactactccaatctcaacaacacc---aaaggagaaaagaagatggagtttcagaagatcatcagc |
15505201 |
T |
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