View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_low_12 (Length: 286)
Name: NF19725_low_12
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 32420403 - 32420132
Alignment:
| Q |
17 |
cactatgggcatctggaattggagcatcacttgtagcttattcacgagttaaatctccaatgaagccaagtctaaggcttatccatgctaggtaaaattt |
116 |
Q |
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| T |
32420403 |
cactatgggcatctggaattggagcatcacttgtagcttattcacgagttaaatctccaatgaagccaagtctaagacttatccatgctaggtaaaattt |
32420304 |
T |
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| Q |
117 |
tcactacaat-----------------attttgttttccatttcaagtgctgaaatgtgtgttgtatcgaataaagtgtaacaaatgttttggtttgaag |
199 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
32420303 |
tcactacaatcttcgataataatttttattttgttttccatttcaagtgct-----------tgtatcgaataaagtgtaacgaatgttttggtttgaag |
32420215 |
T |
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| Q |
200 |
gatgcatgcacaggcgctaactctagcagtgttgtcgggtgcagctgcttatcactattatgagaatcgtgatgatgtccatc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
32420214 |
gatgcatgcacaggcgctaactctagcagtgttgtcgggtgcggctgcttatcactattatgagaatcgtgatgatgttcatc |
32420132 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 36176355 - 36176321
Alignment:
| Q |
76 |
atgaagccaagtctaaggcttatccatgctaggta |
110 |
Q |
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| T |
36176355 |
atgaagccaagtcttaggcttatccatgctaggta |
36176321 |
T |
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