View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_low_14 (Length: 247)
Name: NF19725_low_14
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39083765 - 39083994
Alignment:
| Q |
1 |
agaatcagataacaaagaggattaggtttttaggagttaggttcagtgattttaattttacaattgaattttttcgatcggttttcttggtacagcagcg |
100 |
Q |
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| T |
39083765 |
agaatcagataacaaagaggattaggtttttaggagttaggttcagtgattttaattttacaattgaattttttcgatctgttttcttggtacagcagcg |
39083864 |
T |
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| Q |
101 |
tccggctcatgaacatgcaccaaggagggttaaatcaacacttttgttggacaagttagatgatataagtcatcaatggattgattcagatattcttata |
200 |
Q |
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| T |
39083865 |
tccggctcatgaacatgcaccaaggagggttaaatcaacacttttgttggacaagttagatgatataagtcatcaatggattgattcagatattcttata |
39083964 |
T |
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| Q |
201 |
ttcaatactggtcactggtgggtgccatct |
230 |
Q |
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| T |
39083965 |
ttcaatactggtcactggtgggtgccatct |
39083994 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 40953258 - 40953184
Alignment:
| Q |
147 |
ttggacaagttagatgatataagtcatcaatggattgattcagatattcttatattcaatactggtcactggtgg |
221 |
Q |
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| T |
40953258 |
ttggacaagatagatgatattagccatgaatgggttgattctgatgttcttatattcaattcaggtcactggtgg |
40953184 |
T |
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