View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19725_low_2 (Length: 592)

Name: NF19725_low_2
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19725_low_2
NF19725_low_2
[»] chr4 (31 HSPs)
chr4 (1-574)||(27500763-27501334)
chr4 (9-154)||(27466375-27466519)
chr4 (1-154)||(27473448-27473600)
chr4 (3-154)||(27517038-27517188)
chr4 (177-377)||(27506291-27506489)
chr4 (177-377)||(27486293-27486493)
chr4 (177-377)||(27479233-27479433)
chr4 (471-573)||(27526236-27526338)
chr4 (467-574)||(27498325-27498432)
chr4 (300-379)||(27526881-27526960)
chr4 (471-566)||(27476601-27476696)
chr4 (467-566)||(27516740-27516839)
chr4 (461-574)||(27554215-27554326)
chr4 (468-573)||(27500462-27500567)
chr4 (253-372)||(27473129-27473256)
chr4 (473-580)||(27473808-27473915)
chr4 (471-573)||(27486894-27486999)
chr4 (471-573)||(27523527-27523632)
chr4 (471-530)||(27507980-27508036)
chr4 (480-560)||(27466744-27466824)
chr4 (471-573)||(27479812-27479917)
chr4 (471-573)||(27505826-27505931)
chr4 (472-573)||(27513900-27514004)
chr4 (516-573)||(27469419-27469476)
chr4 (471-573)||(27502931-27503030)
chr4 (468-574)||(27444917-27445032)
chr4 (480-521)||(27563543-27563584)
chr4 (516-573)||(27570173-27570230)
chr4 (468-520)||(27412563-27412615)
chr4 (468-504)||(27420301-27420337)
chr4 (471-519)||(27557394-27557442)
[»] chr5 (1 HSPs)
chr5 (471-572)||(1754366-1754467)


Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 27500763 - 27501334
Alignment:
Q  1 tcatgtttagacaagatcaaatgaaacatcacatggtgttttctttacgagttttgaggactttctcaaagatcaacatcaaatgttgtggtagatagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27500763 tcatgtttagacaagatcaaatgaaacatcacatggtgttttctttaagagttttgaggactttctcaaagatcaacatcaaatgttgtggtagatagat 27500862  T
Q  101 aatgcaagtcccaccttgttgagcagaggccagcatataattaatcaacttgaat-ggtactacttttactgcaaagaacatgtctgaaacatgcttaca 199  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  27500863 aatgcaagtcccaccttgttgagcagaggccagcatagagttaatgaacttgaattggtactactt--actgcaaagaacatgtctgaaacatgcttaca 27500960  T
Q  200 caattatgaagtactacttaatgcatgaacaaataattggttgcagttgaaagggtggggtacaaatcttaaaacaacaccacatgctatatcatcttat 299  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27500961 caattatgaagtacttcttaatgcatgaacaaataagtggttgcagttgaaagggtggggtacaa-tcttaaaacaacaccacatgctatatcatcttat 27501059  T
Q  300 cctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataaccataaatatactaacaattgcctttagtttaagcaccac 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27501060 cctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataactataaatatactaacaattgcctttagtttaagcaccac 27501159  T
Q  400 acaattcattggcatcctaaaatattagttacatcctttgtttagatcaatctctccggttttttcccaacacatacaagaatgggttttcgtttacctg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27501160 acaattcattggcatcctaaaatattagttacatcctttgtttagatcaatctctccgggtttttcccaacacatacaagaatgggttttcgtttacctg 27501259  T
Q  500 gtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtgggagagg 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  27501260 gtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatgtctagcagtatatgttggagagg 27501334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 27466519 - 27466375
Alignment:
Q  9 agacaagatcaaatgaaacatcacatggtgttttctttacgagttttgaggactttctcaaagatcaacatcaaatgttgtggtagatagataatgcaag 108  Q
    |||||||| || |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27466519 agacaagagcatatgaaacatcacatggtgttgtcttaa-gagttttgaggactttctcaaagatcaacatcaaatgttgtggtagatagataatgcaag 27466421  T
Q  109 tcccaccttgttgagcagaggccagcatataattaatcaacttgaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27466420 tcccaccttgttgagcagaggccagcatataattaatcaacttgaa 27466375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 27473600 - 27473448
Alignment:
Q  1 tcatgtttagacaagatcaaatgaaacatcacatggtgttttctttacgagttttgaggactttctcaaagatcaacatcaaatgttgtggtagatagat 100  Q
    ||||||| |||||||| || |||||||||||||||||||| |||||| || ||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  27473600 tcatgttcagacaagagcatatgaaacatcacatggtgttgtcttta-gaatttagaggactttctcaaggatcaacatcaaatcttgtggtagatagat 27473502  T
Q  101 aatgcaagtcccaccttgttgagcagaggccagcatataattaatcaacttgaa 154  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||    
T  27473501 aatgcaagtcccaccttgttgagcagaggccagcatagagttaatgaacttgaa 27473448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 27517038 - 27517188
Alignment:
Q  3 atgtttagacaagatcaaatgaaacatcacatggtgttttctttacgagttttgaggactttctcaaagatcaacatcaaatgttgtggtagatagataa 102  Q
    ||||| |||||| | || ||||||| |||||||||||| |||| | || ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27517038 atgttcagacaacagcatatgaaacgtcacatggtgttgtcttca-gaatttagaggactttctcaaagatcaacatcaaatgttgtggtaggtagataa 27517136  T
Q  103 tgcaagtcccaccttgttgagcagaggccagcatataattaatcaacttgaa 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27517137 tgcaagtcccaccttgttgagtagaggccagcatataattaatcaacttgaa 27517188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 27506291 - 27506489
Alignment:
Q  177 aacatgtctgaaacatgcttacacaattatgaagtactacttaatgcatgaacaaataattggttgcagttgaaagggtggggtacaaatcttaaaacaa 276  Q
    ||||||||||||||||| ||||| |||||||||||  || ||||||||||||||||||   ||||| | |||||||||||| |||||| |||| | ||||    
T  27506291 aacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtgtacaa-tctttagacaa 27506389  T
Q  277 caccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataaccataaatatactaaca 376  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||| |||||||  | | |||| ||||||||||| |||    
T  27506390 c-ccacatgctatatcatcttatcctttaattctttcaaacaataatttatcttggaattaggtttgcaaagaatattagtaactataaatatacttaca 27506488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 177 - 377
Target Start/End: Complemental strand, 27486493 - 27486293
Alignment:
Q  177 aacatgtctgaaacatgcttacacaattatgaagtactacttaatgcatgaacaaataattggttgcagttgaaagggtgg-ggtacaaatcttaaaaca 275  Q
    ||||||||||||||||| |||||||||||||||||  || |||||| ||||| |||||   ||||| | |||||||||||| |||| || | || | |||    
T  27486493 aacatgtctgaaacatgtttacacaattatgaagtgatagttaatggatgaaaaaatatgaggttgaatttgaaagggtggtggtataa-tgtttagaca 27486395  T
Q  276 acaccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataaccataaatatactaac 375  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||||||||| |||| ||||| ||||||| |||| |||| ||||||||||| ||    
T  27486394 acaccacatggtatatcatcttatcctttaactctttcaagaaataatttagcttggaattaggtttgcaaagaatctcagtaactataaatatacttac 27486295  T
Q  376 aa 377  Q
    ||    
T  27486294 aa 27486293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 177 - 377
Target Start/End: Complemental strand, 27479433 - 27479233
Alignment:
Q  177 aacatgtctgaaacatgcttacacaattatgaagtactacttaatgcatgaacaaataattggttgcagttgaaagggtgg-ggtacaaatcttaaaaca 275  Q
    ||||||||||||||||| |||||||||||||||||  || |||||  ||||  |||||   ||||| | |||||||||||| ||||||| | || | |||    
T  27479433 aacatgtctgaaacatgtttacacaattatgaagtgatagttaatagatgataaaatatgaggttgaacttgaaagggtggtggtacaa-tgtttagaca 27479335  T
Q  276 acaccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataaccataaatatactaac 375  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||||||||| |||| ||||| ||||||| |||| |||| ||||||||||| ||    
T  27479334 acaccacatggtatatcatcttatcctttaactctttcaagaaataatttagcttggaattaggtttgcaaagaatctcagtaactataaatatacttac 27479235  T
Q  376 aa 377  Q
    ||    
T  27479234 aa 27479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 471 - 573
Target Start/End: Complemental strand, 27526338 - 27526236
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtggga 570  Q
    |||||||| ||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||    
T  27526338 acatacaacaatgggttttcgtttacctagtatcatcaaaagggcatcatcttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttgga 27526239  T
Q  571 gag 573  Q
    |||    
T  27526238 gag 27526236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 467 - 574
Target Start/End: Original strand, 27498325 - 27498432
Alignment:
Q  467 caacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgt 566  Q
    |||||||||| | |||||||||||||||||| |||||| | ||||||||||| ||||||||||| || ||  | ||||||||||||||||||||||||||    
T  27498325 caacacatacgaaaatgggttttcgtttaccaggtatcatcagaaggacatcgtcttcaaaaggcgtggacatgccaaagggatatctagcagtatatgt 27498424  T
Q  567 gggagagg 574  Q
     |||||||    
T  27498425 tggagagg 27498432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 27526881 - 27526960
Alignment:
Q  300 cctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataaccataaatatactaacaatt 379  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| |||| ||||||||||| ||||||    
T  27526881 cctttaactcttttaaacaataatttagcttggaattaggtttccagagaacctcagtaactataaatatacttacaatt 27526960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 566
Target Start/End: Original strand, 27476601 - 27476696
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgt 566  Q
    |||||||| ||||||||| ||||||||| ||||| | | |||||||||||||||||||   || || ||||||||||||||||||||||| |||||    
T  27476601 acatacaacaatgggtttccgtttacctagtatcatcaaaaggacatcatcttcaaaaaccgtggacgttccaaagggatatctagcagtgtatgt 27476696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 566
Target Start/End: Complemental strand, 27516839 - 27516740
Alignment:
Q  467 caacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgt 566  Q
    |||||||||||| ||||||||||||||||||| ||||| | | |||| ||||||||||||||  ||| |  |||||||||||||||||||| || |||||    
T  27516839 caacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaatctgtgggcgttccaaagggatatctagctgtgtatgt 27516740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 461 - 574
Target Start/End: Original strand, 27554215 - 27554326
Alignment:
Q  461 ttttcccaacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagt 560  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| | ||  | | ||||||||||||| || || || ||||||||||| || |||||    
T  27554215 ttttcacaagacatacaagaatgggttttcgtttacctggtatcctca-aacca-agcatcttcaaaaggagtggatgtgccaaagggataccttgcagt 27554312  T
Q  561 atatgtgggagagg 574  Q
    |||||| |||||||    
T  27554313 atatgttggagagg 27554326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 573
Target Start/End: Complemental strand, 27500567 - 27500462
Alignment:
Q  468 aacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtg 567  Q
    ||||| ||||| ||||||||||||||||||| ||||| | | |||| ||||||||||||||  ||| || || ||||| |||||||||||||| || ||     
T  27500567 aacacgtacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaatctgtggacgtaccaaaaggatatctagcagtgtacgta 27500468  T
Q  568 ggagag 573  Q
    ||||||    
T  27500467 ggagag 27500462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 253 - 372
Target Start/End: Complemental strand, 27473256 - 27473129
Alignment:
Q  253 ggtggggtacaaatcttaaaacaacaccacatgctatatcatcttatcct---------ttaactctttcaaacaataatttagcttgtaattgggtttc 343  Q
    |||||||||||| |||||| ||||||||| ||||||||| ||||||| ||         |||||  ||||||| |||||||||||||| |||||| |||     
T  27473256 ggtggggtacaa-tcttaagacaacaccaaatgctatattatcttatgctatttaatcgttaacaatttcaaataataatttagcttggaattggatttt 27473158  T
Q  344 caaagaacctcaataaccataaatatact 372  Q
    || |||||||||||||| |||||||||||    
T  27473157 cagagaacctcaataactataaatatact 27473129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 580
Target Start/End: Original strand, 27473808 - 27473915
Alignment:
Q  473 atacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtgggaga 572  Q
    |||||| ||||||||||||||||||  ||||| | | |||| ||||||||||||||  ||| |  |||||||||||||||||||| || || || |||||    
T  27473808 atacaacaatgggttttcgtttaccaagtatcatcaaaagggcatcatcttcaaaatctgtgggtgttccaaagggatatctagctgtgtacgtaggaga 27473907  T
Q  573 ggtgatga 580  Q
    || |||||    
T  27473908 ggagatga 27473915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 573
Target Start/End: Original strand, 27486894 - 27486999
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaaga---aggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtg 567  Q
    |||||||| ||||||||| ||||||||  ||||| | |||   ||| ||||||||||||||| ||| || ||||||||||||||||||||||| || ||     
T  27486894 acatacaacaatgggtttccgtttaccaagtatcatcagatcaagggcatcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgta 27486993  T
Q  568 ggagag 573  Q
    ||||||    
T  27486994 ggagag 27486999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 573
Target Start/End: Complemental strand, 27523632 - 27523527
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaaga---aggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtg 567  Q
    |||||||| ||||||||||||||||| | ||||| | |||   ||| ||||||||||||||| ||| || ||||||||||| ||||||||||| || ||     
T  27523632 acatacaacaatgggttttcgtttacgtagtatcatcagatcaagggcatcatcttcaaaagctgtggacgttccaaagggctatctagcagtgtacgta 27523533  T
Q  568 ggagag 573  Q
    ||||||    
T  27523532 ggagag 27523527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 27508036 - 27507980
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaagg 530  Q
    |||||||||||||||||||| |||||||||||||   |||||| ||||||||||||||||    
T  27508036 acatacaagaatgggttttcatttacctggtatc---agaagggcatcatcttcaaaagg 27507980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 560
Target Start/End: Original strand, 27466744 - 27466824
Alignment:
Q  480 aatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagt 560  Q
    ||||||||| ||||||||| ||||| | | |||| ||||||||||||||  ||| |  |||||||||||||||||||||||    
T  27466744 aatgggtttccgtttacctagtatcatcaaaaggtcatcatcttcaaaatctgtgggcgttccaaagggatatctagcagt 27466824  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 573
Target Start/End: Original strand, 27479812 - 27479917
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaaga---aggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtg 567  Q
    |||||||| ||||||||||||||||||  ||||| | |||   ||| ||||||||||||||||| | || || ||||| || |||||||||||||| ||     
T  27479812 acatacaacaatgggttttcgtttaccaagtatcatcagatcaagggcatcatcttcaaaaggtttggacgtgccaaaaggctatctagcagtatacgta 27479911  T
Q  568 ggagag 573  Q
    ||||||    
T  27479912 ggagag 27479917  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 573
Target Start/End: Complemental strand, 27505931 - 27505826
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaaga---aggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtg 567  Q
    |||||||| ||||||||||||||||||  ||||| | |||   | | ||||||||||||||||| | ||||| |||||||| ||||||||||| || ||     
T  27505931 acatacaacaatgggttttcgtttaccaagtatcatcagatcaaaggcatcatcttcaaaaggtttggaggtgccaaaggggtatctagcagtgtacgta 27505832  T
Q  568 ggagag 573  Q
    ||||||    
T  27505831 ggagag 27505826  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 573
Target Start/End: Complemental strand, 27514004 - 27513900
Alignment:
Q  472 catacaagaatgggttttcgtttacctggtatcctaaga---aggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtgg 568  Q
    ||||||| ||||||||||||||||||  ||||| | |||   |||  |||||||||||||| ||| || || ||||| |||||||||||||| ||||| |    
T  27514004 catacaacaatgggttttcgtttaccaagtatcatcagatcaagggtatcatcttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtag 27513905  T
Q  569 gagag 573  Q
    |||||    
T  27513904 gagag 27513900  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 516 - 573
Target Start/End: Original strand, 27469419 - 27469476
Alignment:
Q  516 atcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtgggagag 573  Q
    |||||||||||||| ||| || ||||||||||||||||||||||| || || ||||||    
T  27469419 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagag 27469476  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 573
Target Start/End: Complemental strand, 27503030 - 27502931
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtggga 570  Q
    |||||||||||||||||||| |||||| ||||||   | |||| ||||||||||||||||  | || || ||||| |||||||| || || ||||| |||    
T  27503030 acatacaagaatgggttttcatttaccaggtatc---aaaaggtcatcatcttcaaaaggcttggatgtgccaaaaggatatcttgccgtttatgtagga 27502934  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 574
Target Start/End: Complemental strand, 27445032 - 27444917
Alignment:
Q  468 aacacatacaagaatgggttttcgtttacctggtatcctaagaaggac---------atcatcttcaaaaggtgtcgaggttccaaagggatatctagca 558  Q
    |||||||||||||||||||||||||||| | |||||| | |||||| |         | ||||||||||||| || || || |||||||||||||| |||    
T  27445032 aacacatacaagaatgggttttcgtttaaccggtatcatcagaagggctgcaaaccaaacatcttcaaaaggcgtggatgtgccaaagggatatcttgca 27444933  T
Q  559 gtatatgtgggagagg 574  Q
    ||||| || |||||||    
T  27444932 gtatacgttggagagg 27444917  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 521
Target Start/End: Complemental strand, 27563584 - 27563543
Alignment:
Q  480 aatgggttttcgtttacctggtatcctaagaaggacatcatc 521  Q
    ||||||||||||||||||||||||| | |||||| |||||||    
T  27563584 aatgggttttcgtttacctggtatcattagaaggtcatcatc 27563543  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 27570230 - 27570173
Alignment:
Q  516 atcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtgggagag 573  Q
    |||| ||||||||| ||| || || |||||||||||||| ||||||||||| ||||||    
T  27570230 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 27570173  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 27412563 - 27412615
Alignment:
Q  468 aacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcat 520  Q
    ||||||||||| |||||||||||||||  |||||||| | |||||| ||||||    
T  27412563 aacacatacaaaaatgggttttcgtttctctggtatcatcagaagggcatcat 27412615  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 27420301 - 27420337
Alignment:
Q  468 aacacatacaagaatgggttttcgtttacctggtatc 504  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  27420301 aacacatacaacaatgggttttcgtttccctggtatc 27420337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 27557394 - 27557442
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaagaaggacatca 519  Q
    ||||| ||||||||||||||||||||||| |||| | |||||| |||||    
T  27557394 acatataagaatgggttttcgtttacctgttatcatcagaagggcatca 27557442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 572
Target Start/End: Complemental strand, 1754467 - 1754366
Alignment:
Q  471 acatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaaggtgtcgaggttccaaagggatatctagcagtatatgtggga 570  Q
    |||||||| ||||||||||||||||||| ||||| | | ||||||||||||  ||||||| || || |  ||||| ||||||||||| |||||||| |||    
T  1754467 acatacaacaatgggttttcgtttacctagtatcatcaaaaggacatcatccccaaaaggcgtggacgagccaaaaggatatctagctgtatatgttgga 1754368  T
Q  571 ga 572  Q
    ||    
T  1754367 ga 1754366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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