View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19725_low_4 (Length: 464)
Name: NF19725_low_4
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 49690484 - 49690923
Alignment:
| Q |
10 |
aagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49690484 |
aagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgtt |
49690583 |
T |
|
| Q |
110 |
ctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggttt |
209 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
49690584 |
ctctcatttgactgtgttactgctacttgtcttaactaggaaaggaaatggacacagtggtgattgtccagactcatttggttgtggaaatcttgggttt |
49690683 |
T |
|
| Q |
210 |
cttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49690684 |
tttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagt |
49690783 |
T |
|
| Q |
310 |
taatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagctttt |
409 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49690784 |
taaccaaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcaccaagctttt |
49690883 |
T |
|
| Q |
410 |
ggagaaaaatgcttgtgaggcattcagctatgttaatatt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49690884 |
ggagaaaaatgcttgtgaggcattcagctatgttaatatt |
49690923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 102 - 449
Target Start/End: Original strand, 49678949 - 49679288
Alignment:
| Q |
102 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--- |
49679045 |
T |
|
| Q |
202 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
301 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49679046 |
-----ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagca |
49679140 |
T |
|
| Q |
302 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
401 |
Q |
| |
|
|||||||||| |||| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49679141 |
cgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcacc |
49679240 |
T |
|
| Q |
402 |
aagcttttggagaaaaatgcttgtgaggcattcagctatgttaatatt |
449 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
49679241 |
aagcttttggagaagaatgcttgtgaggcattcagccatgttaatatt |
49679288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 49686236 - 49686649
Alignment:
| Q |
14 |
atatatttatgtcgtgcaaattaa-aagtgtggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgttctc |
112 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| |||| ||| | |||||| ||||| ||| ||||| ||||||||||| |
|
|
| T |
49686236 |
atatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggatggctctagttcatgcactacat---------cttttgttctc |
49686326 |
T |
|
| Q |
113 |
tcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttctt |
212 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || |
|
|
| T |
49686327 |
tcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatcttggattggtt |
49686426 |
T |
|
| Q |
213 |
aaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaa |
312 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||| | |
|
|
| T |
49686427 |
ggctacccttttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagttta |
49686526 |
T |
|
| Q |
313 |
tcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttgga |
412 |
Q |
| |
|
|||| | ||||||| ||| ||||||| ||| ||| | ||| | || | |||| ||||||||||| |||| | ||| |||||||||||||| | |
|
|
| T |
49686527 |
ccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcaccaagcttttgca |
49686620 |
T |
|
| Q |
413 |
gaaaaatgcttgtgaggcattcagctatg |
441 |
Q |
| |
|
|||||||||||| ||||| || ||||||| |
|
|
| T |
49686621 |
gaaaaatgcttgcgaggcctttagctatg |
49686649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University