View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_low_5 (Length: 442)
Name: NF19725_low_5
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_5 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 35706517 - 35706943
Alignment:
| Q |
16 |
agacagagtttatgactatgatgtctacaatgatcttggagatcctgacaccaacattgaactcaaaagacctgtttttggtggcaccaaacaatatcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35706517 |
agacagagtttatgactatgatgtctacaatgatcttggagatcctgataccaacattgaactcaaaagacctgtttttggtggcaccaaacaatatcca |
35706616 |
T |
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| Q |
116 |
tatccaagacgctgtcgcactggtcgaaagcattctgatgcaggttatctannnnnnncatggtataaatttttgagatctttgaagatatatatgttca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35706617 |
tatccaagacgctgtcgcactggtcgaaagcattctgatgcaggttatctatttttttcatggtataaatttttgagatctttgaagatatatatgttca |
35706716 |
T |
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| Q |
216 |
taacacaannnnnnnnatgcagaccctttatatgaagaaaggagtaatttagacttctatgttcctcgtgatgagtcattttctgaaacaaaacagacac |
315 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35706717 |
taacacaattttttttatgcagaccctttatatgaagaaaggagtaatttagacttctatgttcctcgtgatgagtcattttctgaaacaaaacagacac |
35706816 |
T |
|
| Q |
316 |
aattcaatacttctaccatagctttagggataactgctgttattcaatccttagacacaattctcacagatccaaatcttggatttgctagctttgaaga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35706817 |
aattcaatacttctaccatagctttagggataactgctgttattcaatccttagacacaattctcacagatccaaatcttggatttgctagctttgaaga |
35706916 |
T |
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| Q |
416 |
catagaagaaatatacaaagaaggatt |
442 |
Q |
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| T |
35706917 |
catagaagaaatttacaaagaaggatt |
35706943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 232 - 442
Target Start/End: Original strand, 35722661 - 35722871
Alignment:
| Q |
232 |
atgcagaccctttatatgaagaaaggagtaatttagacttctatgttcctcgtgatgagtcattttctgaaacaaaacagacacaattcaatacttctac |
331 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||| | |
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| T |
35722661 |
atgcagacccactatatgaagaaaggagtactttagacttctatgttcctcgtgacgaggcatttgctgaaacaaagcagacacaattcaatacttctgc |
35722760 |
T |
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| Q |
332 |
catagctttagggataactgctgttattcaatccttagacacaattctcacagatccaaatcttggatttgctagctttgaagacatagaagaaatatac |
431 |
Q |
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| T |
35722761 |
cgtatctttaggcttgactacaattattcaatccttagacgcaatagtcactgatataaatcttgggtttgctaactttgaagacatagaagcaatttac |
35722860 |
T |
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| Q |
432 |
aaagaaggatt |
442 |
Q |
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||||||||||| |
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| T |
35722861 |
aaagaaggatt |
35722871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 35728313 - 35728171
Alignment:
| Q |
24 |
tttatgactatgatgtctacaatgatcttggagatcctgacaccaacattgaactcaaaagacctgtttttggtggcaccaaacaatatccatatccaag |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35728313 |
tttatgactatgatgtctacaatgatcttggagatcctgagaccaacattaaactcaaaagacctgttcttggtggcaccaaacaatatccgtatccaag |
35728214 |
T |
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| Q |
124 |
acgctgtcgcactggtcgaaagcattctgatgcaggttatcta |
166 |
Q |
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||| ||||| || ||||||||||||||| || ||||||||||| |
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| T |
35728213 |
acgttgtcgtaccggtcgaaagcattctaatacaggttatcta |
35728171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 35722339 - 35722489
Alignment:
| Q |
16 |
agacagagtttatgactatgatgtctacaatgatcttggagatcctgacaccaacattgaactcaaaagacctgtttttggtggcaccaaacaatatcca |
115 |
Q |
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||||||| | ||||| |||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
35722339 |
agacagaatctatgattatgatgtctacaatgatcttggagatcctgacataaccactgacctcaaaagacctgttcttggtggcaccaaacaatatcca |
35722438 |
T |
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| Q |
116 |
tatccaagacgctgtcgcactggtcgaaagcattctgatgcaggttatcta |
166 |
Q |
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||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
35722439 |
tatcctagacgctgtcgcaccggtcgaaagcattctgatacaggttatcta |
35722489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 442
Target Start/End: Complemental strand, 35727841 - 35727759
Alignment:
| Q |
360 |
caatccttagacacaattctcacagatccaaatcttggatttgctagctttgaagacatagaagaaatatacaaagaaggatt |
442 |
Q |
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|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| ||| | |||||| ||||||| |
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| T |
35727841 |
caatccttggacacaattctcactgacataaatcttggatttgacagctttgaagacatagacgaactttacaaacaaggatt |
35727759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 9603139 - 9603179
Alignment:
| Q |
20 |
agagtttatgactatgatgtctacaatgatcttggagatcc |
60 |
Q |
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| T |
9603139 |
agagtttatgattatgatgtctacaatgatcttggtgatcc |
9603179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 21848552 - 21848470
Alignment:
| Q |
245 |
atatgaagaaaggagtaatttagacttctatgttcctcgtgatgagtcattttctgaaacaaaacagacacaattcaatactt |
327 |
Q |
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||||||||||||||||| ||||| || | ||| |||||||||||| ||| | || || | || ||||||||||||||||||| |
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| T |
21848552 |
atatgaagaaaggagtacattagatttttttgtacctcgtgatgaggcatctactaaagcgaagcagacacaattcaatactt |
21848470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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