View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19725_low_6 (Length: 409)
Name: NF19725_low_6
Description: NF19725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19725_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 37060365 - 37060742
Alignment:
| Q |
14 |
caaaggtgaaggtgacagaaacatcaacatttggacagctaaagccacaggtattactaaaatatctcatttattgataacttgaccaattaattaataa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37060365 |
caaaggtgaaggtgacagaaacatcaacatttggacagctaaagccacaggtattactaaaatatctcatttattgataacttgaccaattgattaataa |
37060464 |
T |
|
| Q |
114 |
tgaatacagactctatttatacatacgagtccatacaaaaaagaagataataaggataactgacttgattaacattatcttaaataacaggctccaacgg |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37060465 |
tgaatacagactctatttatacatactagtccatacaaaaaagaagataataaggataactaacttgattaacattatcttaaataacaggctccaacgg |
37060564 |
T |
|
| Q |
214 |
tctcttacgacgagcttcgcttggcaactgaagagttcagccaagaaaatttaataggaattgggagttttggaaaagtgtataaaggccatttacgtca |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37060565 |
tctcttacgatgagcttcgcttggcaactgaagagttcagccaagaaaatttaataggaattgggagttttggaaaagtgtataaaggccatttacgtca |
37060664 |
T |
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| Q |
314 |
gggaaatagtactgttgcagtgaaagtgcttgatacttcaagaacaggttttttaaagagtttctttgcagagtgtga |
391 |
Q |
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| T |
37060665 |
gggaaatagtactgttgcagtgaaagtgcttgatacttcaagaacaggttttttaaagagtttctttgcagagtgtga |
37060742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 37067841 - 37068221
Alignment:
| Q |
14 |
caaaggtgaaggtgacagaaacatcaacatttggacagctaaagccacaggtattactaaaatatctcatttattgataacttgaccaattaattaataa |
113 |
Q |
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||||||||||||| |||| ||||||| ||| ||||||| || | | ||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
37067841 |
caaaggtgaaggtaacagcaacatcagcatctggacagatacatcgacaggtattactaaaatatctcatttattgataacttgatcaattgattaatta |
37067940 |
T |
|
| Q |
114 |
tgaataca--gactctatttatacatacgagtccatacaaaaa---agaagataataaggataactgacttgattaacattatcttaaataacaggctcc |
208 |
Q |
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|||||||| ||||||||||| |||| ||||||||| | || |||||||||| || ||| || |||| | ||||||||||| ||||||||| ||| |
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| T |
37067941 |
tgaatacaaggactctatttacacat--gagtccatatgataatgaagaagataatgagaatacctaacttaactaacattatctctaataacagggtcc |
37068038 |
T |
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| Q |
209 |
aacggtctcttacgacgagcttcgcttggcaactgaagagttcagccaagaaaatttaataggaattgggagttttggaaaagtgtataaaggccattta |
308 |
Q |
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|| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37068039 |
aatggtctcttacgacgagcttcgtttggcgactgaggagttcagccaagaaaatttaataggaattgggagttttggatcagtgtataaaggccattta |
37068138 |
T |
|
| Q |
309 |
cgtcagggaaatagtactgttgcagtgaaagtgcttgatacttcaagaacaggttttttaaagagtttctttgcagagtgtga |
391 |
Q |
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| T |
37068139 |
agtcagggaaatagtactactgcagtgaaagtgcttgatactctaagaacaggttctttaaagagtttctttgcagagtgtga |
37068221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 4236545 - 4236507
Alignment:
| Q |
60 |
acaggtattactaaaatatctcatttattgataacttga |
98 |
Q |
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| T |
4236545 |
acaggtattactaaaatatcttatttatcgataacttga |
4236507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 402337 - 402299
Alignment:
| Q |
60 |
acaggtattactaaaatatctcatttattgataacttga |
98 |
Q |
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| T |
402337 |
acaggtattactaaaatatctcatttatcgataacttga |
402299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 43651843 - 43651815
Alignment:
| Q |
66 |
attactaaaatatctcatttattgataac |
94 |
Q |
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| T |
43651843 |
attactaaaatatctcatttattgataac |
43651815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 2764950 - 2764907
Alignment:
| Q |
61 |
caggtattactaaaatatctcatttattgataacttgaccaatt |
104 |
Q |
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| T |
2764950 |
caggtatttctaaactatctcatttattgataacttgatcaatt |
2764907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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