View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_14 (Length: 536)
Name: NF19726_high_14
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 5580778 - 5580635
Alignment:
| Q |
15 |
ctcaagaaggaatataaagtggcacccttaatttggctaaggtgagtttcttttacattttaagtgattaattcaaattgaaattagc--ttatagtgca |
112 |
Q |
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| T |
5580778 |
ctcaagaaggaatataaagtggcacccttaatttggctaaggtgagtttcttttacattttaagtgattaattcaaattgaaattagcttttatagtgca |
5580679 |
T |
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| Q |
113 |
ctttgtgattctatctatttcnnnnnnnattatgatgccttttt |
156 |
Q |
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| T |
5580678 |
ctttgtgattctatctatttctttttttattatgatgccttttt |
5580635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12066709 - 12066765
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga |
287 |
Q |
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| T |
12066709 |
ttagtcccacattgctaccaaagaaacataacacatgtgaagttgttctatataaga |
12066765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12046991 - 12047047
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga |
287 |
Q |
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| T |
12046991 |
ttagtcccacattgctagcaaagaaaaataacacatgtgaagttgttatatataaga |
12047047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12058621 - 12058677
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga |
287 |
Q |
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| T |
12058621 |
ttagtcccatattgctagcaaagaaacataacacatgtgaagttgttatatataaga |
12058677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 5570125 - 5570071
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataa |
285 |
Q |
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||||||||||||||| ||||| ||||||||||||| | || ||||||||||||| |
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| T |
5570125 |
ttagtcccacattgccagcaaagaaacataacatacgggaagttgttctatataa |
5570071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 5578686 - 5578632
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataa |
285 |
Q |
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| T |
5578686 |
ttagtcccacattgcttgcaaagaaacataacatacgtagagttgtcctatataa |
5578632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 5584959 - 5584908
Alignment:
| Q |
232 |
tagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataa |
285 |
Q |
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|||||| |||| |||||||| ||||||||||||||| |||||||||||||||| |
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| T |
5584959 |
tagtccaacatcgctagcaaagaaacataacatatg--aacttgttctatataa |
5584908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 1085688 - 1085724
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatg |
267 |
Q |
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| T |
1085688 |
ttagtcccacatttctagcaaagaaacataacatatg |
1085724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12051303 - 12051359
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga |
287 |
Q |
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|||||||||||||||| |||| |||||| |||| |||| || ||||| ||||||||| |
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| T |
12051303 |
ttagtcccacattgcttgcaaagaaacaaaacacatgtgaagttgttatatataaga |
12051359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12064066 - 12064122
Alignment:
| Q |
231 |
ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga |
287 |
Q |
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|||||||||||||||||| || ||||||||||| |||| || ||||| |||| |||| |
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| T |
12064066 |
ttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatacaaga |
12064122 |
T |
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