View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_high_15 (Length: 492)
Name: NF19726_high_15
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 144 - 485
Target Start/End: Complemental strand, 55697099 - 55696758
Alignment:
| Q |
144 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatctcttaatctaggttgttattgcgtgctcagatattttgttctgcaatgttttt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55697099 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatctcttaatctaggttgttattgcgtcctcagatattttgttctgcaatgttttt |
55697000 |
T |
|
| Q |
244 |
ctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgggga |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696999 |
ctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgggga |
55696900 |
T |
|
| Q |
344 |
gaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacat |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55696899 |
gaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacat |
55696800 |
T |
|
| Q |
444 |
ttacaagtcccatgaatctggggatcgttttccttcatctca |
485 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
55696799 |
ttacaagtcccatgaatccggtgatcgtcttccttcatctca |
55696758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 55697453 - 55697407
Alignment:
| Q |
144 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55697453 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatc |
55697407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 32012145 - 32012017
Alignment:
| Q |
18 |
atataccatattcaataatgt----gatgacatgcttgagccaataaagacaacttatatctagggcctgtctgaacgatgactcatgcatcctccctcg |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
32012145 |
atataccatattcaataatgttataaatgacatgcttgagccaataaagacaacttatatctagggcctgtctaaacaatgactcatgcatcctcccctg |
32012046 |
T |
|
| Q |
114 |
tacacctcatgcaaagccttcaacttctt |
142 |
Q |
| |
|
| | ||||||||||||||||||||||||| |
|
|
| T |
32012045 |
ttcccctcatgcaaagccttcaacttctt |
32012017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 9235337 - 9235226
Alignment:
| Q |
321 |
aaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgt |
420 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| || ||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| || ||| |
|
|
| T |
9235337 |
aaaaacttggcagatcgtcgggagaatgtcagcagagcaaaagaaagttcttctgttcttttggacatctgtgaaacatttaccagttgaaggtttccgt |
9235238 |
T |
|
| Q |
421 |
ggtttgggttcc |
432 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
9235237 |
ggcttgagttcc |
9235226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 9246920 - 9246830
Alignment:
| Q |
323 |
aaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
413 |
Q |
| |
|
||||||||||||| || ||||||||| |||| || |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
9246920 |
aaacttggcagatcgttgggagaatgccagcagagcaaaagaaggttcttctgttcttctggacatctgtgaaacatttaccagttgaagg |
9246830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 427
Target Start/End: Complemental strand, 9255080 - 9254973
Alignment:
| Q |
320 |
aaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcg |
419 |
Q |
| |
|
|||||||||||||||| || || |||||| |||| || ||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||| || | |
|
|
| T |
9255080 |
aaaaaacttggcagatcgttggaagaatgtcagcagagcaaaggaaggttcttctgttcttttggacatctgtgaaacatttaccagttaaaggtttcca |
9254981 |
T |
|
| Q |
420 |
tggtttgg |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
9254980 |
tggtttgg |
9254973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 9265047 - 9264993
Alignment:
| Q |
359 |
aaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
9265047 |
aaaagaaggttcttctgttcttttggacatcagtgaaacatttaccagtcgaagg |
9264993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University