View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_high_18 (Length: 452)
Name: NF19726_high_18
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 44 - 434
Target Start/End: Complemental strand, 14250441 - 14250052
Alignment:
| Q |
44 |
tataaagacttggtcacataattaaaactatgcaaaaagtgtgctgttttgatttctcttttggatctcttaacacggatttagaaattaacagaaactg |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
14250441 |
tataaagacttggtcacataattaaaactatgcaaaaagtgtgccgttttgatttctcttttggatctcttaacacg-atttaaaaatcaacagaaactg |
14250343 |
T |
|
| Q |
144 |
aaaaacagtcgaacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacg |
243 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14250342 |
aaaaacaatcgaacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacg |
14250243 |
T |
|
| Q |
244 |
cgtgtttttaccgactgcaagaagaaacattaaaagtgttacactatacctttttcatttcctccacttcattcatatttttcaagtagttaggagataa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14250242 |
cgtgtttttaccgactgcaagaagaaacattaaaagtgttacactatacctttttcatttcctccacttcattcatatttttcaagtagttaggagataa |
14250143 |
T |
|
| Q |
344 |
gaatactcacttggtgtcccaaagaaaggatgacataagggtcactggtcactacatctctaatagctaggtgagtgcctttcctaacatt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14250142 |
gaatactcacttggtgtcccaaagaaaggatgacataagggtcactggtcactacatctctaatagctaggtgagtgcctttcctaacatt |
14250052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 4988168 - 4988278
Alignment:
| Q |
155 |
aacttaccactttaaggggaggaatgttctctggaattgatagcattagactttcattccaaactggattcaaattgttccttataacgcgtgtttttac |
254 |
Q |
| |
|
||||||| | |||||| ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||| || || || || |
|
|
| T |
4988168 |
aacttactattttaagaggagggatgttctcagggattgacagcattaggctttcattccaaacaggatttaaattgttctttataacacgcgtcttcac |
4988267 |
T |
|
| Q |
255 |
cgactgcaaga |
265 |
Q |
| |
|
||||||||||| |
|
|
| T |
4988268 |
cgactgcaaga |
4988278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 4988351 - 4988428
Alignment:
| Q |
348 |
actcacttggtgtcccaaagaaaggatgacataagggtcactggtcactacatctctaatagctaggtgagtgccttt |
425 |
Q |
| |
|
|||||| ||||| || | |||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
4988351 |
actcacctggtgaccaagagaaaggatgacataagggtcactagtcactatatctctgatagctaggttagtgccttt |
4988428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University