View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_19 (Length: 447)
Name: NF19726_high_19
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 37843961 - 37844387
Alignment:
| Q |
18 |
tcctgctgatcgtgtacctgacatgagtaagagagagaccttgaatcttcttcttcttggtgctctttcacttcctactgctggaatgcttgttccttat |
117 |
Q |
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| T |
37843961 |
tcctgctgatcgtgtacctgacatgagtaagagagagaccttgaatcttcttcttcttggtgctctttcacttcctactgctggaatgcttgttccttat |
37844060 |
T |
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| Q |
118 |
ggatccttccttgttccaccagggttagnnnnnnnattttattgtatttctagttcatgtatgtaatgttgtatagtataggaagcactaacacagaca- |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844061 |
ggatccttccttgttccaccagggttagtttttttattttattgtatttctagttcatgtatgtaatgttgtatagtataggaagcactaacacagacac |
37844160 |
T |
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| Q |
217 |
-----------atatacatgcaccaataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatatatcaaagttct |
305 |
Q |
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| T |
37844161 |
agacacgaacaatatacatgcaccgataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgtatcgaagttct |
37844260 |
T |
|
| Q |
306 |
gtcgatgttagacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaata |
405 |
Q |
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| T |
37844261 |
gtcgatgttagacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaata |
37844360 |
T |
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| Q |
406 |
gcaagtgtataccaaataatcatcggc |
432 |
Q |
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| T |
37844361 |
gcaagtgtataccaaataatcatcggc |
37844387 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 16330969 - 16331029
Alignment:
| Q |
232 |
taccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
292 |
Q |
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| T |
16330969 |
taccgacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacat |
16331029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 16567286 - 16567342
Alignment:
| Q |
236 |
gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
292 |
Q |
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| T |
16567286 |
gacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacat |
16567342 |
T |
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