View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_20 (Length: 446)
Name: NF19726_high_20
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 56 - 428
Target Start/End: Original strand, 42145638 - 42146010
Alignment:
| Q |
56 |
ggaatgaatttttaatcatatttgatatagtatgattaatcatatttgatatagttacaacgcaaatcatgcaatctcctgttgatctgtccagtgaaga |
155 |
Q |
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| T |
42145638 |
ggaatgaatttttaatcatatttgatatagtatgattaatcatatttgatatagttaaaacacaaatcatgcaatctcctgttgacctgtccagtgaaga |
42145737 |
T |
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| Q |
156 |
tcacatacatagaatggtggttcacaatgttctggtgtggtagatgtcgagtcttcacggtagaggagaaagttgtcttcaaatacgttagtacttcaaa |
255 |
Q |
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| T |
42145738 |
tcacatacgtagaatggtggttcacaatgttccggtgtggtagatgtcgagtcttcaccgtagaggagaaagttgtgtgcaaatacgttagcactccaaa |
42145837 |
T |
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| Q |
256 |
actcaagtcagtatttaaaagatttgattatgtgtgaaatgtggtgaaaatgaagtgtaccttgaggataacgcagactcatccttatatagatgatgag |
355 |
Q |
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| T |
42145838 |
actcaagacaatatttaaaagatttgattatgtgtgaaatgtggtgaaaatgaagtgtaccttgaggatgacgctgactcatccttatatagatgatgag |
42145937 |
T |
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| Q |
356 |
agtgctaatcatctcggtgagatgtgccgtgatcaaaagggttgttagagatgacatgaacggcggagatgag |
428 |
Q |
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| T |
42145938 |
agtgctaatcgtctctgtgagatgtggcgtgatcaaaagggttgttagagatgacatgaacggcggagatgag |
42146010 |
T |
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