View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_26 (Length: 394)
Name: NF19726_high_26
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 48107585 - 48107936
Alignment:
| Q |
16 |
gttagttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatct |
115 |
Q |
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| T |
48107585 |
gttagttacctgaaaaagtatatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatct |
48107684 |
T |
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| Q |
116 |
atttccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccct |
215 |
Q |
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| T |
48107685 |
atttccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttactataattccccct |
48107784 |
T |
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| Q |
216 |
ccatattgtgctctttgaggttctttcatacactgttttatttcaaggcattgacaacacaagaaagtttatgcaatataatgtttaagaattaataatc |
315 |
Q |
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| T |
48107785 |
ccatattgtgctctttgaggttctttcatacactgttttattccaaggcattgacaacacaagaaaatttatgc-----aatgtttaagaattaataatc |
48107879 |
T |
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| Q |
316 |
atattaaaagatgtgtcaatattattacctcaatagtagcaaaataatcgtagtccaaagaat |
378 |
Q |
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| T |
48107880 |
atattaaaagatgtgtc------attacctcaatagtagcaaaataatcatagtccaaagaat |
48107936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 48063919 - 48064166
Alignment:
| Q |
19 |
agttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctatt |
118 |
Q |
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| T |
48063919 |
agttaccagaaaacatgtatatcattcctttcttcagttggaccttctgtgagaaaccatccaatgtttgtcttctgttgctagcaacaatgaatctatt |
48064018 |
T |
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| Q |
119 |
tccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctcca |
218 |
Q |
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| T |
48064019 |
ttcatcatttgatattcgttcctcgattgttccatttccaaacactctccaaccctttatgttgtgatcaaatcctggatttactataatgcctcctcca |
48064118 |
T |
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| Q |
219 |
tattgtgctctttgaggttctttcatacactgttttatttcaaggcat |
266 |
Q |
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| T |
48064119 |
tattgtgccctcttaggttctgtcacacactgctttatttcaaggcat |
48064166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 48101173 - 48101445
Alignment:
| Q |
20 |
gttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
119 |
Q |
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| T |
48101173 |
gttaccagaaaaagtatatatcattcctttcttcagttggaccttctgtgaaaaactatccaatggttgtgttctgttgctggcaacaatgaatctattt |
48101272 |
T |
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| Q |
120 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctccat |
219 |
Q |
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| T |
48101273 |
ccgttgtttgatactcgttcctcgattgttccatttccaaacactttccagccatttatgttgtgatcaaatcctggatttactgtaatgcctcccccat |
48101372 |
T |
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| Q |
220 |
attgtgctctttgaggttctttcatacactgttttatttcaaggcattgacaacacaagaaagtttatgcaat |
292 |
Q |
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| T |
48101373 |
attgtgccctcttaggttctgtcacacactgctttgtttataggcattggcaacacaagtaagtttgtgcaat |
48101445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 48068576 - 48068818
Alignment:
| Q |
20 |
gttacctgaaaaagtgtatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
119 |
Q |
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| T |
48068576 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
48068675 |
T |
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| Q |
120 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttattataattccccctccat |
219 |
Q |
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| T |
48068676 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacaccgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
48068775 |
T |
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| Q |
220 |
attgtgctctttgaggttctttcatacactgttttatttcaag |
262 |
Q |
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| T |
48068776 |
attgtgctctctgaggttctgggacacactggtttatttcaag |
48068818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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