View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_high_29 (Length: 383)
Name: NF19726_high_29
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 59 - 369
Target Start/End: Complemental strand, 15556978 - 15556679
Alignment:
| Q |
59 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaacctcaataacattcatatgttcctgt |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15556978 |
tttaaattttcaagccattcctatcccattttaacccatacaagttttcaagttacattacatctatcttccaacctcaataacattcatatgttcctgt |
15556879 |
T |
|
| Q |
159 |
acttttgcttttcagatcacattttctaccatgtcaccatatacactatcataattgatcacttaagagcaatctttattatacaatccattgnnnnnnn |
258 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15556878 |
acttttgc-tttcagatcccattttctcccatgtcaccatatacagtatcataattgatcactaaagagcaatctttattatacaatccattg------- |
15556787 |
T |
|
| Q |
259 |
ncaaataaatcaataaaagtggacatcaataactgttacctatcaagcnnnnnnntggaactactgtttgttgaaaatgttatcaatccaacacccaaga |
358 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15556786 |
--aaaaaaataaataaaagtggacatcaataactgttacctatcaagcaaaaaagtggaactactgtttgttgaaaatgttatcaatccaaca-ccaaga |
15556690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 46506265 - 46506325
Alignment:
| Q |
13 |
cagaggtatgtttcaaaataagttctagaatcttttccctgtttgctttaaattttcaagc |
73 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||| |||||||| ||||||| ||||||||||| |
|
|
| T |
46506265 |
cagaggcatgtttcaaagtaagttctacaatgttttccctctttgcttataattttcaagc |
46506325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University