View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_34 (Length: 334)
Name: NF19726_high_34
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 40662845 - 40663146
Alignment:
| Q |
15 |
aacatccgagtttcatcacaacaacgttgctgctgtggttgaaagatgactgcagaagtgatgtgtcgagaatgatctgttgatccttgtaaaatatctt |
114 |
Q |
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| T |
40662845 |
aacatccgagtttcatctcaacaacgttgctgctgtggttgaaagatgactgcagaagtgatgtgtcgagaatgatctgttgatccttgtaaaatatctt |
40662944 |
T |
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| Q |
115 |
gggatcaaatgaatcgtggtggtatgagattcgcaaatggtggttagggtttgatagggagagtgtaattttccattcagctgtgagttttgtgtttttg |
214 |
Q |
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| T |
40662945 |
gggatcaaatgaatcgtggtggtatgagattcgcaaatggtagttagggtttgatagggagagtgtaattttccattcagctgtgagttttgtgtttttg |
40663044 |
T |
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| Q |
215 |
tttattgttagtgagttgagctgtgaggccgggtcaagtcgcaaaattggtaaatgtgaataagcactgacgtataagcaacccatgaggatgaaaagga |
314 |
Q |
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| T |
40663045 |
tttattgtttgtgagttgagctgtgaggccgagtcaagtcgcaaaattggtaaatgtgaataagcactgacgtataagcaacccatgaggatgaaaagga |
40663144 |
T |
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| Q |
315 |
gt |
316 |
Q |
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| T |
40663145 |
gt |
40663146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 40658741 - 40658819
Alignment:
| Q |
130 |
gtggtggtatgagattcgcaaatggtggttagggtttgatagggagagtgtaattttccattcagctgtgagttttgtg |
208 |
Q |
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| T |
40658741 |
gtggtggtatgagattcgcaaatagtggttggggtttgatacagagagtgtgatattcaattcggcagtgagttttgtg |
40658819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 40669266 - 40669372
Alignment:
| Q |
102 |
tgtaaaatatcttgggatcaaatgaatcgtggtggtatgagattcgcaaatggtggttagggtttgatagggagagtgtaattttccattcagctgtgag |
201 |
Q |
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| T |
40669266 |
tgtaaaatatcttgccatgaaatgcatcgtggtggtaggaaattcgaagatggccgttagggtttgaaagcaagagttttatgttccattcggctgagag |
40669365 |
T |
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| Q |
202 |
ttttgtg |
208 |
Q |
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| T |
40669366 |
ttttgtg |
40669372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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