View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_high_39 (Length: 296)
Name: NF19726_high_39
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 11834314 - 11834041
Alignment:
| Q |
4 |
aattctctagagtatttttgttggacaccaattaatgtgctttagaataccataagtactatcaactagttgcatgtggaatttgattcaaatattgtgg |
103 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11834314 |
aattctctagggtatttttgttagacaccaattaatatgctttagaataccataagtactatcaactagttgcatgtggaatttgattcaaatattgcag |
11834215 |
T |
|
| Q |
104 |
taagaatcaagagaactgtggaatctgatagaatttatgcaaaaaattatgaacagtaacatctgtttttgcattgttcgatcacaaatattacaggttc |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11834214 |
taagag--------actgtggaatctgatagaatttatgcagaaaaatttgaacagtaacatctgtttttgcattgttcgatcacaaatattataggttc |
11834123 |
T |
|
| Q |
204 |
catcgatggaagaataaagaaaggtcttgtaatgaaccatagaccagtgttgtaaacaaaagcttttatatattcccatatt |
285 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
11834122 |
catcgatggaaaaataaagaaaggtcttgtaatgaaccattgaccactgttgttcacaaaagcttttatatattcccatatt |
11834041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 11750687 - 11750517
Alignment:
| Q |
112 |
aagagaactgtggaatctgatagaatttatgcaaaaaattatgaacagtaacatctgtttttgcattgttcgatcacaaatattacaggttccatcgatg |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| |||||| | | |||||||||||| || ||||||| || |
|
|
| T |
11750687 |
aagagaactgtggaatctaatagaatttatgcagaaaattacaaacagtaacatccgttttggcattgcttgctcacaaatattatagcttccatccatt |
11750588 |
T |
|
| Q |
212 |
gaagaataaagaaaggtcttgtaatgaacc----atagaccagtgttgtaaacaaaagcttttatatattcccat |
282 |
Q |
| |
|
||||||| |||||| ||||||||||| || |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
11750587 |
gaagaat----aaaggtactgtaatgaaccattgattgaccagtgttgtgcacaaaagcttttatgtattcccat |
11750517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 11750858 - 11750790
Alignment:
| Q |
3 |
taattctctagagtatttttgttggacaccaattaatgtgctttagaataccataagtactatcaacta |
71 |
Q |
| |
|
|||||||||||| |||| || ||||||| |||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
11750858 |
taattctctagattattgttcttggacatcaattaatgtgctttagaattccacaagcactatcaacta |
11750790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University