View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_59 (Length: 240)
Name: NF19726_high_59
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 46874589 - 46874368
Alignment:
| Q |
9 |
gtagcaagaataaataaacctattaattgatcacacccaccaatgaggcaatgaccatgtttccaaannnnnnngttaatgcaatacttatccaaatgag |
108 |
Q |
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| T |
46874589 |
gtagcaagaataaataaacctattaattgatcacacccaccaatgaggcaatgaccatgtttccaaaattctttgttaatgcaatacttatccaaatgag |
46874490 |
T |
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| Q |
109 |
gtgtgtttccaagagcacaacaagaggtcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttctttttt |
208 |
Q |
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| T |
46874489 |
gtgtgtttccaagagcacaacaagaggtcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttcttt |
46874390 |
T |
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| Q |
209 |
gcctgctcctcttcctttgcta |
230 |
Q |
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| T |
46874389 |
gcctgctcctcttcctttgcta |
46874368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 46892328 - 46892216
Alignment:
| Q |
95 |
cttatccaaatgaggtgtgtttccaagagcacaacaagagg---tcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaa |
191 |
Q |
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| T |
46892328 |
cttatccaaatgaggtgtgtttccacgagcacaacaagagtagttcaatcatcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaa |
46892229 |
T |
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| Q |
192 |
gtatacgtttctt |
204 |
Q |
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| T |
46892228 |
gtatacgtttctt |
46892216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 46865650 - 46865565
Alignment:
| Q |
143 |
tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttttttgcctgctcctcttcctttgc |
228 |
Q |
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| T |
46865650 |
tcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc |
46865565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 27301007 - 27300924
Alignment:
| Q |
143 |
tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttttttgcctgctcctcttccttt |
226 |
Q |
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| T |
27301007 |
tcaatccaatcaccataaatacgattgatctcgctgaatttcaacccaagtatacgttttttctttgcctgttcatcttccttt |
27300924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 27310878 - 27310808
Alignment:
| Q |
127 |
aacaagaggtcaaccgtcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatac |
197 |
Q |
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| T |
27310878 |
aacaagagttcaatcatcaattcaatcaccataaatacgattgatcttgctgaattttaacccaagtatac |
27310808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 22690037 - 22690086
Alignment:
| Q |
179 |
aatttcaacccaagtatacgtttcttttttgcctgctcctcttcctttgc |
228 |
Q |
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| T |
22690037 |
aatttcaaccaaagtaaacgcttcttcttagcctgctcctcttcctttgc |
22690086 |
T |
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