View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_high_64 (Length: 227)
Name: NF19726_high_64
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_64 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 36 - 227
Target Start/End: Original strand, 40662578 - 40662768
Alignment:
| Q |
36 |
ctaaatggacacacattcctaaaactaaggttaactacatactccatcaataatacggatcggaaacgggtttggtacagtttacaccgtgcaatagaat |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662578 |
ctaaatggacacacattcctaaaactaagggtaactacatactccatcaataatacg-atcggaaacgggtttggtacagtttacaccgtgcaatagaat |
40662676 |
T |
|
| Q |
136 |
ccaagatgttgtgttgtagatattttgtgaaatttcaaggctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatga |
227 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662677 |
ccaagatgttgtgctgcagatattttgtgaaatttcaaagctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatga |
40662768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40662512 - 40662560
Alignment:
| Q |
2 |
tataaataattcatacataaattgagatcacaagctaaatggacacaca |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40662512 |
tataaataattcatacataaattgagatcacaagctaaatgaacacaca |
40662560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University