View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_high_9 (Length: 598)
Name: NF19726_high_9
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 44821507 - 44822105
Alignment:
| Q |
1 |
tcgtggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaaaaatcacaaagaataggattgcaatagaaa |
100 |
Q |
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| T |
44821507 |
tcgtggaaatcatcctctactttgacaatatgattcccagcaccatataaaatgtaaccgattaaaagaagaatcacaaagaataggattgcagtagaaa |
44821606 |
T |
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| Q |
101 |
gtgctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaa-tcagttccagaaaa |
199 |
Q |
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| T |
44821607 |
gtgctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaagtcagttccagaaaa |
44821706 |
T |
|
| Q |
200 |
tgtaatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaattcaagcttactttcatggacaagagaaacatc |
299 |
Q |
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| T |
44821707 |
tgtaatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaaatcaagcttactttcatggacaagagaaacatc |
44821806 |
T |
|
| Q |
300 |
accttcttcgtattggttgccatacatgattaggggatcagtagaattcgtgacatcgtatacattgaccaaaattgcttgatgaccagcaagtcgacca |
399 |
Q |
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| T |
44821807 |
accttcttcgtattggttgccatacatgattaggggatcagaagagttcgtgacatcatatacattgaccaaaattgcttgatgaccagcaagttgacca |
44821906 |
T |
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| Q |
400 |
agtaaattttccacaagtgactccacatcaaaggatcctccaacatatctgcctccaattaaaaagttcattaatcacatgttcttttgaaatgcttata |
499 |
Q |
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| T |
44821907 |
agtaaattttccacaagtgactccacatcaaaggatcctccaacatatctgcctccaattaaaaagttcattaatcacatgttctattgaaatgcttaca |
44822006 |
T |
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| Q |
500 |
acaaaatataaccaaatacaagccttgtaacagaaacagttttcttcaactcaatgatagaagctgtgtcgataacactaatggtggcattgacggatt |
598 |
Q |
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| T |
44822007 |
acaaaatataaccaaatacaagccttgtaacagaaacagttttcttcaactcaatgatagaagttgtgtcgataacactaatagtggcattgacagatt |
44822105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 28130098 - 28129733
Alignment:
| Q |
1 |
tcgtggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaaaaatcacaaagaataggattgcaatagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
28130098 |
tcgtggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaagaatcacaaagaataggattgcagtagaaa |
28129999 |
T |
|
| Q |
101 |
gtgctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaa-tcagttccagaaaa |
199 |
Q |
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| T |
28129998 |
gtgctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaagtcagttccagaaaa |
28129899 |
T |
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| Q |
200 |
tgtaatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaattcaagcttactttcatggacaagagaaacatc |
299 |
Q |
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| T |
28129898 |
tgtaatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaaatcaagcttactttcatggacaagagaaacatc |
28129799 |
T |
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| Q |
300 |
accttcttcgtattggttgccatacatgattaggggatcagtagaattcgtgacatcgtatacatt |
365 |
Q |
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| T |
28129798 |
accttcttcgtattggttgccatacatgattaggggatcagtagagttcgtgacatcatatacatt |
28129733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 485 - 591
Target Start/End: Complemental strand, 28129734 - 28129628
Alignment:
| Q |
485 |
tttgaaatgcttataacaaaatataaccaaatacaagccttgtaacagaaacagttttcttcaactcaatgatagaagctgtgtcgataacactaatggt |
584 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129734 |
tttgaaatgcttacaacaaaatataaccaaatacaagccttgtaacagaaacagttttcttcaactcaatgatagaagctgtgtcgataacactaatggt |
28129635 |
T |
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| Q |
585 |
ggcattg |
591 |
Q |
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| T |
28129634 |
ggcattg |
28129628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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