View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_10 (Length: 597)
Name: NF19726_low_10
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 9e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 8277454 - 8277641
Alignment:
| Q |
3 |
tgcagaattcttatcatagcttacttggtgacgaagcgatactaagaagtcttaaacagaaagtataagtagacgttccgtgttaaactcaatcacacag |
102 |
Q |
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| T |
8277454 |
tgcagaattcttctcgtagcttacttggtgacgaagcgatacgaagaagtcttaaacagaaagtataagtagacgttccgtgttaaactcaatcacacaa |
8277553 |
T |
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| Q |
103 |
cccaaacccaaacaaaccctaatttcaattctttataaactctcacacaaaccccaatttcacttcgattcgatccgatcatccatta |
190 |
Q |
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| T |
8277554 |
cccaaacccaaacaaaccctaatttcaattctttataaactctcacacaaacctcaatttcacttcgattcgatccgatcatccatta |
8277641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 449 - 583
Target Start/End: Original strand, 8277916 - 8278050
Alignment:
| Q |
449 |
gaagaaataatcaaaattttctattttattagtctgattgaaattgctgggactatgcgatgatgaaatttaggttttttaactacatggatagcagagt |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8277916 |
gaagaaataatcaaaattttctattttattagtctgattaaaattgttgggactatgcgatgatgaaatttaggttttttaactacatggatagcagaat |
8278015 |
T |
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| Q |
549 |
taacatgtttacctgtcagttattcgatgaaaatt |
583 |
Q |
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| T |
8278016 |
taacatgtttacctgtcagttattcgatgaaaatt |
8278050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 8277784 - 8277841
Alignment:
| Q |
326 |
aatcatgtctaaggcttccttcaagactcaacatcctttcggtaatttattcatctga |
383 |
Q |
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| T |
8277784 |
aatcatgtctaaggcttccttcaagactcaacatcctttcggtaatttattcatctga |
8277841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 31277447 - 31277404
Alignment:
| Q |
326 |
aatcatgtctaaggcttccttcaagactcaacatcctttcggta |
369 |
Q |
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||||||||||||| ||||||||||||||||||||| ||| |||| |
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| T |
31277447 |
aatcatgtctaagccttccttcaagactcaacatcatttaggta |
31277404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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