View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_11 (Length: 580)
Name: NF19726_low_11
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_11 |
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| [»] scaffold0272 (3 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 254 - 562
Target Start/End: Original strand, 5110 - 5419
Alignment:
| Q |
254 |
aatataattgaaagatctagaaggattctggtgccatgtttgattgcatcaagaagtatgctttgttctattgtgagcttaaatggttaagaatttaatg |
353 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5110 |
aatataatggaaagatctagaagggttctggtgccatgtttgattgcatcaagaagtatgttttgttctattgtgagcttaaatggttaagaatttaatg |
5209 |
T |
|
| Q |
354 |
aaaagtattgtgggatc-atttcaaaatgagatgcttaaatgagactctgagtcttataagatccccaaaaatttcttacccaatgagggtgcctattag |
452 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||||||| |||||||||| |
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| T |
5210 |
aaaagtattgtgggatccatttcaaaatgagatgcttaaatgagacgctgagtcttataaaatccccaaaaatttcctccccaatgaggatgcctattag |
5309 |
T |
|
| Q |
453 |
atatcaagtcttaaatggttaagacatcaccattaaagatgatttaacagcaccaaaaacatacaaaaatacatgggcaggaggaaaaagacccacatcg |
552 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310 |
atatcaagtcttaaatggttaagatatcaccattaaggatgatttaacaacaccaaaaacatacaaaaatacatgggcaggaggaaaaagacccacatcg |
5409 |
T |
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| Q |
553 |
atggtgcatg |
562 |
Q |
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|||||||||| |
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| T |
5410 |
atggtgcatg |
5419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 3260 - 3173
Alignment:
| Q |
67 |
aatacattgattttaggagaggccaccacgagaaaaaataatgttacaaatcaaatttatagcatttttcgttttggtccccaacgaa |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
3260 |
aatacattgattttaggagaggccaccacgagaaaaaataatgttacaaatcaaatttatagtatttttcgtttcggtccccaacgaa |
3173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 4666 - 4733
Alignment:
| Q |
160 |
aatggatcactttgtgtaattggtctcaaaagtgaaatgttagaacttcagttgggagagtttaattt |
227 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4666 |
aatggatcactttgtgtaattggtcttaaaagtggaatgttagaacttcagttgggagagtttaattt |
4733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 33712126 - 33712062
Alignment:
| Q |
265 |
aagatctagaaggattctggtgccatgtttgattgcatcaagaagtatgctttgttctattgtga |
329 |
Q |
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||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33712126 |
aagatctagcaggttcctgctgccatgtttgattgcttcaagaagtatgctttgttctattgtga |
33712062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 33713111 - 33713071
Alignment:
| Q |
170 |
tttgtgtaattggtctcaaaagtgaaatgttagaacttcag |
210 |
Q |
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| T |
33713111 |
tttgtgtaattggtctcaaaagtggaatgttagaacttcag |
33713071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 33709274 - 33709230
Alignment:
| Q |
13 |
aacaacactaccataaactacagggtaagtttaatcgaaagcaat |
57 |
Q |
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|||||||||||||||||||||| | ||||| |||||||||||||| |
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| T |
33709274 |
aacaacactaccataaactacaagataagtataatcgaaagcaat |
33709230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 65139 - 65188
Alignment:
| Q |
13 |
aacaacactaccataaactacagggtaagtttaatcgaaagcaatatcaa |
62 |
Q |
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||||| ||||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
65139 |
aacaatactaccataaactacagagtaagtataattcaaagcaatatcaa |
65188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 45283005 - 45283058
Alignment:
| Q |
345 |
aatttaatgaaaagtattgtgggatc-atttcaaaatgagatgcttaaatgaga |
397 |
Q |
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|||||||||||||||| ||| ||||| |||| ||||||||||| |||||||||| |
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| T |
45283005 |
aatttaatgaaaagtactgtaggatccatttaaaaatgagatgtttaaatgaga |
45283058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 38223941 - 38223901
Alignment:
| Q |
387 |
cttaaatgagactctgagtcttataagatccccaaaaattt |
427 |
Q |
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| T |
38223941 |
cttaagtgagactctgggtcttataagacccccaaaaattt |
38223901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 495
Target Start/End: Complemental strand, 8757339 - 8757232
Alignment:
| Q |
387 |
cttaaatgagactctgagtcttataagatccccaaaaatttcttacccaatgagggtgcctattagatatcaagtcttaaatggttaagacatcaccatt |
486 |
Q |
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||||| |||||||||| ||||| ||||||||||||| | || |||||| || || | ||||||||| | | |||||||||| ||||| |||||||| |
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| T |
8757339 |
cttaagtgagactctggatcttaagagatccccaaaaaata-ttccccaataagagtacatattagataccgaatcttaaatggcgaagacctcaccatt |
8757241 |
T |
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| Q |
487 |
aaagatgat |
495 |
Q |
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||||||||| |
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| T |
8757240 |
aaagatgat |
8757232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 22425226 - 22425274
Alignment:
| Q |
434 |
caatgagggtgcctattagatatcaagtcttaaatggttaagacatcac |
482 |
Q |
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||||| |||| |||||||||||||| |||||||||||| ||||| |||| |
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| T |
22425226 |
caatgggggtacctattagatatcaggtcttaaatggtgaagacctcac |
22425274 |
T |
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