View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19726_low_14 (Length: 536)

Name: NF19726_low_14
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19726_low_14
NF19726_low_14
[»] chr2 (10 HSPs)
chr2 (15-156)||(5580635-5580778)
chr2 (231-287)||(12066709-12066765)
chr2 (231-287)||(12046991-12047047)
chr2 (231-287)||(12058621-12058677)
chr2 (231-285)||(5570071-5570125)
chr2 (231-285)||(5578632-5578686)
chr2 (232-285)||(5584908-5584959)
chr2 (231-267)||(1085688-1085724)
chr2 (231-287)||(12051303-12051359)
chr2 (231-287)||(12064066-12064122)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 5580778 - 5580635
Alignment:
Q  15 ctcaagaaggaatataaagtggcacccttaatttggctaaggtgagtttcttttacattttaagtgattaattcaaattgaaattagc--ttatagtgca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5580778 ctcaagaaggaatataaagtggcacccttaatttggctaaggtgagtttcttttacattttaagtgattaattcaaattgaaattagcttttatagtgca 5580679  T
Q  113 ctttgtgattctatctatttcnnnnnnnattatgatgccttttt 156  Q
    |||||||||||||||||||||       ||||||||||||||||    
T  5580678 ctttgtgattctatctatttctttttttattatgatgccttttt 5580635  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12066709 - 12066765
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga 287  Q
    ||||||||||||||||| ||| ||||||||||| |||| || |||||||||||||||    
T  12066709 ttagtcccacattgctaccaaagaaacataacacatgtgaagttgttctatataaga 12066765  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12046991 - 12047047
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga 287  Q
    ||||||||||||||||||||| |||| |||||| |||| || ||||| |||||||||    
T  12046991 ttagtcccacattgctagcaaagaaaaataacacatgtgaagttgttatatataaga 12047047  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12058621 - 12058677
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga 287  Q
    ||||||||| ||||||||||| ||||||||||| |||| || ||||| |||||||||    
T  12058621 ttagtcccatattgctagcaaagaaacataacacatgtgaagttgttatatataaga 12058677  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 5570125 - 5570071
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataa 285  Q
    ||||||||||||||| ||||| ||||||||||||| |  || |||||||||||||    
T  5570125 ttagtcccacattgccagcaaagaaacataacatacgggaagttgttctatataa 5570071  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 5578686 - 5578632
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataa 285  Q
    |||||||||||||||| |||| ||||||||||||| ||| | |||| ||||||||    
T  5578686 ttagtcccacattgcttgcaaagaaacataacatacgtagagttgtcctatataa 5578632  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 5584959 - 5584908
Alignment:
Q  232 tagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataa 285  Q
    |||||| |||| |||||||| |||||||||||||||  ||||||||||||||||    
T  5584959 tagtccaacatcgctagcaaagaaacataacatatg--aacttgttctatataa 5584908  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 1085688 - 1085724
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatg 267  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  1085688 ttagtcccacatttctagcaaagaaacataacatatg 1085724  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12051303 - 12051359
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga 287  Q
    |||||||||||||||| |||| |||||| |||| |||| || ||||| |||||||||    
T  12051303 ttagtcccacattgcttgcaaagaaacaaaacacatgtgaagttgttatatataaga 12051359  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12064066 - 12064122
Alignment:
Q  231 ttagtcccacattgctagcaatgaaacataacatatgtaaacttgttctatataaga 287  Q
    |||||||||||||||||| || ||||||||||| |||| || ||||| |||| ||||    
T  12064066 ttagtcccacattgctaggaaagaaacataacacatgtgaagttgttatatacaaga 12064122  T

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