View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_16 (Length: 482)
Name: NF19726_low_16
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 32989408 - 32989859
Alignment:
| Q |
13 |
attctaacaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaaggatccaatgcaacctcccttgtga |
112 |
Q |
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| T |
32989408 |
attctaacaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaaggatccaatgcaacctcccttgtga |
32989507 |
T |
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| Q |
113 |
tactagttccatatttggatccaccaccacctggcagttcctcagcaccttcaaaacatacatagagggccccactgttacggttcaagatgccacaact |
212 |
Q |
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| T |
32989508 |
tactagttccatatttggatccaccaccacctggaagttcctcagcaccttcaaaacatacatagagggccccactgttacggttcaagatgccacaact |
32989607 |
T |
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| Q |
213 |
cttaagcacggtgcacaatggtacaccgcgccatactgaagtggagataccagctgcaccccagttgaaaccaatgctttgttttatcatgttctgttcc |
312 |
Q |
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| T |
32989608 |
cttgagtacggtgcacagtggtacaccacgccatactgaagtggagataccagctgcaccccagttgaaaccaatgctttgttttatcatgttctgttcc |
32989707 |
T |
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| Q |
313 |
ttgcgccggttacccgcgcatacaagggtaacagggaattcatgacttgggaagtcgtcgattagttgggccatcgtgaattgggtcgggtttttgacca |
412 |
Q |
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| T |
32989708 |
ttgcgccggttacccgcgcatacaagggtaacagggaattcatgacttgggaagtcgtcgattagttgggccatcgtgaattgggtcgggtttttgacca |
32989807 |
T |
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| Q |
413 |
aacctgatacttcgatggtccaactatcccattgtgcttttgggacaggtcc |
464 |
Q |
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| T |
32989808 |
gacctgatacttcgatggtccaactatcccattgtgcttttgggacaggtcc |
32989859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 32961751 - 32962124
Alignment:
| Q |
19 |
acaggaaaaccatgatctggtgttaaaacgtcaccgttttgcatatatgcaagaatgatatcacgggaaggatccaatgcaacctcccttgtgatactag |
118 |
Q |
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||||||||||| ||||| || | |||||| ||||| ||||||||||| || | ||||||||| | | |||||||||||||||| || |||||||| |
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| T |
32961751 |
acaggaaaaccgtgatcaggagctaaaacctcaccattttgcatatacgccaaaatgatatcgctagtgcgatccaatgcaacctcgctgaggatactag |
32961850 |
T |
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| Q |
119 |
ttccatatttggatccaccaccacctggcagttcctcagcaccttcaaaacatacatagagggccccactgttacggttcaagatgccacaactcttaag |
218 |
Q |
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| T |
32961851 |
ttccatattttgaaccaccaccacctggaagttcctcagcaccttcaaagcatacatagagggccccacttttacggttaaatattccacaacgcttgag |
32961950 |
T |
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| Q |
219 |
cacggtgcacaatggtacaccgcgccatactgaagtggagataccagctgcaccccagttgaaaccaatgctttgttttatcatgttctgttccttgcgc |
318 |
Q |
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| T |
32961951 |
cacggttctcaatggtacaccacgccatactgaagtggaggtagcagacggaccccagttaaatccaatagtctgcttcaccatattctgctccttgcga |
32962050 |
T |
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| Q |
319 |
cggttacccgcgcatacaagggtaacagggaattcatgacttgggaagtcgtcgattagttgggccatcgtgaa |
392 |
Q |
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| T |
32962051 |
cgattcgcggagcaaacaagcgtgacaggaaattcacggcttgggaagtcgttgatgagttggtccatcgtgaa |
32962124 |
T |
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