View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19726_low_21 (Length: 444)

Name: NF19726_low_21
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19726_low_21
NF19726_low_21
[»] chr2 (16 HSPs)
chr2 (59-216)||(3092794-3092951)
chr2 (326-430)||(23395921-23396025)
chr2 (371-429)||(16401123-16401181)
chr2 (329-430)||(11226137-11226238)
chr2 (325-430)||(41069672-41069777)
chr2 (329-430)||(39728977-39729078)
chr2 (326-430)||(6752073-6752177)
chr2 (346-430)||(32832592-32832676)
chr2 (20-62)||(3092240-3092282)
chr2 (339-397)||(3496810-3496868)
chr2 (380-426)||(43711982-43712028)
chr2 (128-164)||(3094748-3094784)
chr2 (373-404)||(33594212-33594243)
chr2 (339-397)||(15141881-15141939)
chr2 (347-397)||(19037078-19037128)
chr2 (329-430)||(31750455-31750554)
[»] chr4 (11 HSPs)
chr4 (256-430)||(29693117-29693286)
chr4 (306-430)||(53406488-53406611)
chr4 (326-430)||(52673197-52673301)
chr4 (339-430)||(46079339-46079430)
chr4 (346-397)||(29724381-29724432)
chr4 (368-428)||(44015413-44015473)
chr4 (339-430)||(29544161-29544252)
chr4 (367-428)||(52198377-52198438)
chr4 (357-397)||(9116266-9116306)
chr4 (366-430)||(23332133-23332197)
chr4 (370-406)||(48102184-48102220)
[»] chr1 (16 HSPs)
chr1 (326-428)||(26478550-26478652)
chr1 (329-430)||(48914984-48915085)
chr1 (326-430)||(19456309-19456413)
chr1 (326-430)||(24671144-24671248)
chr1 (338-430)||(48915375-48915467)
chr1 (339-430)||(50539727-50539818)
chr1 (329-430)||(48915176-48915275)
chr1 (315-397)||(27032331-27032413)
chr1 (339-428)||(19431391-19431480)
chr1 (326-397)||(27907691-27907762)
chr1 (330-397)||(51748544-51748611)
chr1 (375-428)||(26056827-26056880)
chr1 (324-397)||(48843362-48843435)
chr1 (371-430)||(17923859-17923918)
chr1 (380-429)||(34430053-34430102)
chr1 (381-429)||(3950295-3950343)
[»] chr7 (16 HSPs)
chr7 (329-430)||(2628435-2628536)
chr7 (326-430)||(32279293-32279395)
chr7 (380-430)||(11369054-11369104)
chr7 (339-397)||(16876748-16876806)
chr7 (339-397)||(18867959-18868017)
chr7 (339-397)||(23185934-23185992)
chr7 (339-397)||(46425349-46425407)
chr7 (329-430)||(9488768-9488870)
chr7 (366-430)||(33884042-33884106)
chr7 (330-428)||(33957482-33957578)
chr7 (339-397)||(34328108-34328164)
chr7 (371-430)||(37685189-37685248)
chr7 (366-428)||(32204770-32204832)
chr7 (326-428)||(42971644-42971746)
chr7 (380-429)||(24833115-24833164)
chr7 (380-429)||(40591057-40591106)
[»] chr3 (11 HSPs)
chr3 (329-430)||(10688599-10688700)
chr3 (315-397)||(49279466-49279548)
chr3 (339-397)||(4037142-4037200)
chr3 (339-397)||(11233507-11233565)
chr3 (380-428)||(16278814-16278862)
chr3 (339-397)||(39972993-39973051)
chr3 (326-430)||(50700007-50700104)
chr3 (371-430)||(39485469-39485528)
chr3 (339-397)||(39994192-39994250)
chr3 (340-430)||(46348391-46348481)
chr3 (370-430)||(47548868-47548928)
[»] chr8 (7 HSPs)
chr8 (329-430)||(4834969-4835070)
chr8 (341-397)||(41474310-41474366)
chr8 (347-401)||(35793178-35793232)
chr8 (371-429)||(6261083-6261141)
chr8 (339-397)||(33938624-33938682)
chr8 (377-430)||(22786584-22786637)
chr8 (375-429)||(44077744-44077798)
[»] chr5 (10 HSPs)
chr5 (366-427)||(18267856-18267917)
chr5 (371-428)||(33953161-33953218)
chr5 (324-430)||(34928780-34928886)
chr5 (339-397)||(37515594-37515652)
chr5 (366-429)||(22653508-22653571)
chr5 (381-428)||(22029851-22029898)
chr5 (366-428)||(19824612-19824674)
chr5 (377-430)||(22658866-22658919)
chr5 (371-428)||(27554924-27554981)
chr5 (338-402)||(37480284-37480346)
[»] chr6 (6 HSPs)
chr6 (339-397)||(9928262-9928320)
chr6 (329-427)||(9549359-9549459)
chr6 (339-397)||(22469700-22469758)
chr6 (367-428)||(26847169-26847230)
chr6 (380-428)||(457691-457739)
chr6 (347-397)||(7506641-7506691)
[»] scaffold0176 (1 HSPs)
scaffold0176 (326-397)||(15079-15150)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 3092794 - 3092951
Alignment:
Q  59 ctaaaagaaattggaaaacaaacccaaaaccaagcaagaggaatcaagcaaattttacatatagaaaatacttttaatttagttcaatgaagtcgtcaag 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  3092794 ctaaaagaaattggaaaacaaacccaaaaccaagcaagaggaatcaagcaaattttacaaatagaaaatacttttaatttagttcaatgaagtcgtgaag 3092893  T
Q  159 tataattnnnnnnnttcattttaaaaacatgcatatgagccttcttcttctttttttt 216  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||| ||||    
T  3092894 tataattaaaaaaattcattttaaaaacatgcatatgagccttcttcttctttctttt 3092951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 23395921 - 23396025
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||||||| ||||||||||||| |||||||||||| |||| ||| | || |||||||||||||||||| ||| ||  | |||||| ||||||||||    
T  23395921 tgtcattggtacatttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattcatttatcattctctctcatctaa 23396020  T
Q  426 aatga 430  Q
    |||||    
T  23396021 aatga 23396025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 16401181 - 16401123
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16401181 tctctcatgtaaataatttattttaattatttatccaccattctttctcatctaaaatg 16401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 11226137 - 11226238
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||||||| ||||||||||||| |||||||||||| |||| ||||| || |||||||||||||||||| ||| || |  |||||| |||||| ||||||    
T  11226137 cattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcatttaaaat 11226236  T
Q  429 ga 430  Q
    ||    
T  11226237 ga 11226238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 430
Target Start/End: Complemental strand, 41069777 - 41069672
Alignment:
Q  325 atgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatcta 424  Q
    |||| |||| ||| ||||||||||||| |||||||||||  |||| ||||| || |||||||||||||||||| ||| || || |||||| |||||||||    
T  41069777 atgttattgatacatttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatcta 41069678  T
Q  425 aaatga 430  Q
    ||||||    
T  41069677 aaatga 41069672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 39728977 - 39729078
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| ||||||||||||||| | | ||||| ||||  ||| ||||| || |||||||||||||||||| ||| || || |||||| |||||||||||||    
T  39728977 cattgatacttttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 39729076  T
Q  429 ga 430  Q
    ||    
T  39729077 ga 39729078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 6752177 - 6752073
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||| ||| | ||||||||||| ||||||||||||  | | ||||| || |||||||||||||||||| ||| ||  | |||||| ||||||||||    
T  6752177 tgtcattgatacctctgtgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcattcatttatcattctctctcatctaa 6752078  T
Q  426 aatga 430  Q
    |||||    
T  6752077 aatga 6752073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 430
Target Start/End: Complemental strand, 32832676 - 32832592
Alignment:
Q  346 ctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||||| ||||||||| |  |||| ||||| || |||||||||||||||||| ||| ||||| |||||| |||||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaatga 32832592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 3092240 - 3092282
Alignment:
Q  20 attggtatccaataaactttaggtaaccaaagaatttccctaa 62  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  3092240 attggtatccaataaactttaggtaaccaaagaatttctctaa 3092282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 3496868 - 3496810
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  3496868 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 3496810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 43711982 - 43712028
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaa 426  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  43711982 taaataatttattttaattatttgtccaacattctttctcatctaaa 43712028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 3094748 - 3094784
Alignment:
Q  128 acttttaatttagttcaatgaagtcgtcaagtataat 164  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3094748 acttataatttagttcaatgaagtcgtcaagtataat 3094784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 404
Target Start/End: Original strand, 33594212 - 33594243
Alignment:
Q  373 tcttatttaaataatttattttaattatttat 404  Q
    ||||||||||||||||||||||||||||||||    
T  33594212 tcttatttaaataatttattttaattatttat 33594243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 15141881 - 15141939
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| ||| ||||||||  ||| ||||| || ||||||||||||||||||    
T  15141881 tttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaat 15141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 19037128 - 19037078
Alignment:
Q  347 tatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 19037078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 31750455 - 31750554
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| ||| ||||||||||||| |||||||||||  |||| ||||| || |||||  ||||||||||| ||| || || |||||| | | |||||||||    
T  31750455 cattgatacctttgtgtctatctctctcttaacaattcattttctctcatctaaat--tttattttaatcattcattcatcattctctgtgatctaaaat 31750552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 256 - 430
Target Start/End: Original strand, 29693117 - 29693286
Alignment:
Q  256 tgatgttgtgacttatatgaatatctatcttatatatataaatagaggggtagcatttgggtgtcatcgatgtcattggtacttttgtgtctatctttct 355  Q
    |||||||||||||||||||| |||||||||||||||||  ||||||| | |||||||||| |||||||||||||||||||||||||||||||||||  ||    
T  29693117 tgatgttgtgacttatatgagtatctatcttatatata--aatagagcg-tagcatttggatgtcatcgatgtcattggtacttttgtgtctatct--ct 29693211  T
Q  356 cttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||    
T  29693212 cttaacaacatattatctcttatttaaataatttattttaattatttatttatcattctctctcatctaaaatga 29693286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 53406611 - 53406488
Alignment:
Q  306 tagcatttgggtgtcatcgatgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatc 405  Q
    ||||||||||||| ||| | |||||||| ||| || |||||||||| |||||||||||  |||| |||||||| |||||||||||||||||||||||||     
T  53406611 tagcatttgggtgccattggtgtcattgatacctt-gtgtctatctctctcttaacaattcattttctcttatctaaataatttattttaattatttatt 53406513  T
Q  406 caccattctttctcatctaaaatga 430  Q
    || |||| | | |||||||||||||    
T  53406512 catcattttctttcatctaaaatga 53406488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 52673301 - 52673197
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||| || |||||||||||||| ||||||| ||||  ||| ||||| ||  ||||||||||||||||||||| || || |||||| ||||||||||    
T  52673301 tgtcattgatatttttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaa 52673202  T
Q  426 aatga 430  Q
    |||||    
T  52673201 aatga 52673197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 46079430 - 46079339
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||||||||||| |||||||||||| |||| ||||| || |||||||||||||||||| ||| ||  | |||||| |||||||||||||||    
T  46079430 tttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcattcattgatcattctctctcatctaaaatga 46079339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 29724432 - 29724381
Alignment:
Q  346 ctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  29724432 ctatctttctcttaaccactcattatctcttatctaaataatttattttaat 29724381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 44015473 - 44015413
Alignment:
Q  368 ttatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||||||| || |||||||||||||||||| ||| ||| | ||||||||||||||||||||    
T  44015473 ttatctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaaat 44015413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 29544252 - 29544161
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||||||||||| ||| |||||||| |||| ||| | || |||||||||||||||||| ||| ||  | |||| | |||||||||||||||    
T  29544252 tttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaatga 29544161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 52198377 - 52198438
Alignment:
Q  367 attatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||||||| ||  ||||||||||||||||| ||||||| | |||| | |||||||||||||    
T  52198377 attatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaat 52198438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 9116306 - 9116266
Alignment:
Q  357 ttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||| |||| ||||| |||||||||||||||||||||    
T  9116306 ttaacaactcattctctctcatttaaataatttattttaat 9116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 23332133 - 23332197
Alignment:
Q  366 cattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||| ||||| ||||||||||  ||||||||| ||| ||| | |||||| |||||||||||||||    
T  23332133 cattctctctcatttaaataacatattttaatcattcatctaacattctctctcatctaaaatga 23332197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 48102184 - 48102220
Alignment:
Q  370 atctcttatttaaataatttattttaattatttatcc 406  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  48102184 atcttttatttaaataatttattttaatcatttatcc 48102220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 26478550 - 26478652
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||||||| ||||||||||||||||| |||||||  |||||||| | |||||||| |||||||||||||||| || || |||||| ||||||||||    
T  26478550 tgtcattggtacctttgtgtctatctttcttttaacaattcattatctttcatttaaatgatttattttaattattcattcatcattctctctcatctaa 26478649  T
Q  426 aat 428  Q
    |||    
T  26478650 aat 26478652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 48915085 - 48914984
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| ||||||||||||||||| |||||||||||| |||| ||||| ||  ||||||||||||||||| ||| || || |||||| |||||||||||||    
T  48915085 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48914986  T
Q  429 ga 430  Q
    ||    
T  48914985 ga 48914984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 19456413 - 19456309
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    ||||||||| || ||||||||||||| | |||||||||  |||| ||||| || |||||||||||||||||| || ||| || |||||| ||||||||||    
T  19456413 tgtcattggcacctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcatctattcatcattctctctcatctaa 19456314  T
Q  426 aatga 430  Q
    |||||    
T  19456313 aatga 19456309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 24671144 - 24671248
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||| ||| ||||| || |||||||||||||| || |||| ||||| ||||||||||||||||||||| ||| || || || ||| ||||||||||    
T  24671144 tgtcattgatacctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcattcattcatcactctctctcatctaa 24671243  T
Q  426 aatga 430  Q
    |||||    
T  24671244 aatga 24671248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 48915467 - 48915375
Alignment:
Q  338 ttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||||||||||||| |||||||||||| |||| ||||| ||  ||||||||||||||||| ||| || || |||||| |||||||||||||||    
T  48915467 ttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatga 48915375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 50539818 - 50539727
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||| || ||| || |||| | |||| ||||||||||    
T  50539818 tttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcatctattcatcattatctctcttctaaaatga 50539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 48915275 - 48915176
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| ||||||||||||||||| |||||||||||| |||| ||||| ||  ||||||||||||||||| ||| || || |||||  |||||||||||||    
T  48915275 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattc--tctcatctaaaat 48915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 27032413 - 27032331
Alignment:
Q  315 ggtgtcatcgatgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||| | |||||| ||||  ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  27032413 ggtgtcattggtgtcatgggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 27032331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 19431480 - 19431391
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||||||||| | ||||||||| |  |||| ||||| || |||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  19431480 tttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaat 19431391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 27907691 - 27907762
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||| ||||  ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  27907691 tgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 27907762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 51748544 - 51748611
Alignment:
Q  330 attggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||  ||||||||||||||||| |||||||| |||| ||||| || ||||||||||||||||||    
T  51748544 attggtaactttgtgtctatctttcttttaacaactcattctctctcatctaaataatttattttaat 51748611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 26056827 - 26056880
Alignment:
Q  375 ttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| ||||||||||||||||||||||||| | || ||| |||||||||||||    
T  26056827 ttattaaaataatttattttaattatttatctatcactctatctcatctaaaat 26056880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 48843362 - 48843435
Alignment:
Q  324 gatgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||| ||||  ||||| ||||||| |||||||||||  |||| ||||| || ||||||||||||||||||    
T  48843362 gatgtcataggtaactttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaat 48843435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 17923859 - 17923918
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||| || |||||||||||||||||||||| ||||| |||||| ||||||  |||||||    
T  17923859 tctctcatctaaataatttattttaattattcatccaacattctctctcataaaaaatga 17923918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 34430053 - 34430102
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    |||||||||||||||||| ||| ||| | | |||||||||||||||||||    
T  34430053 taaataatttattttaatcattcatctaactttctttctcatctaaaatg 34430102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 3950343 - 3950295
Alignment:
Q  381 aaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    ||||||||||||||||| ||| ||| | |||||| ||||||||||||||    
T  3950343 aaataatttattttaatcattcatcgatcattctctctcatctaaaatg 3950295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 2628536 - 2628435
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||||| ||||||||||| |||||| || |||||| |||||||||||||    
T  2628536 cattgatacttttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaat 2628437  T
Q  429 ga 430  Q
    ||    
T  2628436 ga 2628435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 32279395 - 32279293
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||||||  ||||||||||||| |||||||||||| || | ||||  ||||||||||||||||||||||||| || || |||| | ||||||||||    
T  32279395 tgtcattggtatctttgtgtctatctctctcttaacaacccactctctc--atttaaataatttattttaattattcattcatcattttctctcatctaa 32279298  T
Q  426 aatga 430  Q
    |||||    
T  32279297 aatga 32279293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 11369104 - 11369054
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  11369104 taaataatttattttaatcatttatccaacattctctctcatctaaaatga 11369054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 16876806 - 16876748
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  16876806 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 16876748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 18868017 - 18867959
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  18868017 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 18867959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 23185992 - 23185934
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  23185992 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 23185934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 46425407 - 46425349
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  46425407 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 46425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 9488870 - 9488768
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattct-ttctcatctaaaa 427  Q
    ||||| ||| ||||||| ||||| |||||||||||| ||||  || || | |||||||||||||||||| ||| || || ||||||  ||||||||||||    
T  9488870 cattgatacctttgtgtatatctctctcttaacaactcattccctattctctaaataatttattttaatcattcattcatcattctcctctcatctaaaa 9488771  T
Q  428 tga 430  Q
    |||    
T  9488770 tga 9488768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 33884106 - 33884042
Alignment:
Q  366 cattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||| ||||| || |||||||||||||||||||||  |||||||||||| ||||||  |||||||    
T  33884106 cattctctctcatctaaataatttattttaattatccatccaccattctctctcataaaaaatga 33884042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 33957578 - 33957482
Alignment:
Q  330 attggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||||||| ||||| | ||||||| | ||||| || |||| | ||| |||||  |||||||||||||| ||| ||| | ||||||||||||||||||||    
T  33957578 attggtacatttgtttttatcttttttttaaccactcattctttctcattta--taatttattttaatcattcatctatcattctttctcatctaaaat 33957482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 34328108 - 34328164
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||||||||  ||||||||||| |||| ||||| || ||||||||||||||||||    
T  34328108 tttgtgtctatct--ctcttaacaactcattctctctcatctaaataatttattttaat 34328164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 37685248 - 37685189
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||| || |||||||||||||||||| ||| ||||| |||||| |||| ||||||||||    
T  37685248 tctctcatctaaataatttattttaatcattcatccaacattctctctcgtctaaaatga 37685189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 32204770 - 32204832
Alignment:
Q  366 cattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||||||||| || |||||||||||||||||| ||||||| | |||  | |||||||||||||    
T  32204770 cattatctctcatataaataatttattttaatcatttatctatcatcttctctcatctaaaat 32204832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 42971746 - 42971644
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||| ||||| | ||||| ||||||| ||||||||| |   ||| ||||| || |||||||||||||||||| |||   ||| |||||| ||||||||||    
T  42971746 tgtctttggtgcctttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcattcgcccaacattctctctcatctaa 42971647  T
Q  426 aat 428  Q
    |||    
T  42971646 aat 42971644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 24833115 - 24833164
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    |||||||||||||||||| | |||||||| ||||| | ||||||||||||    
T  24833115 taaataatttattttaatcagttatccactattctctttcatctaaaatg 24833164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 40591057 - 40591106
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    |||||||||||||||||| ||||||| | |||||| | ||||||||||||    
T  40591057 taaataatttattttaatcatttatctaacattctatttcatctaaaatg 40591106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 10688599 - 10688700
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||||||| ||||||||||||| |||||||||||| |||| ||||| || |||||||||||||||||| ||| || || |||||| |||||||||||||    
T  10688599 cattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 10688698  T
Q  429 ga 430  Q
    ||    
T  10688699 ga 10688700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 49279466 - 49279548
Alignment:
Q  315 ggtgtcatcgatgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||||| | |||||| ||||  ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  49279466 ggtgtcattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 49279548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 4037142 - 4037200
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  4037142 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 4037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 11233507 - 11233565
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  11233507 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 11233565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 16278814 - 16278862
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  16278814 taaataatttattttaattattcatccatcattctttcttatctaaaat 16278862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 39972993 - 39973051
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| ||  |||||||||||||||||    
T  39972993 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaat 39973051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 50700007 - 50700104
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaa 425  Q
    |||||||||||| |||||||  |||| ||||||||||   |||| |||||  | |||||||||||||||||| |||||| || |||||  ||||||||||    
T  50700007 tgtcattggtacatttgtgt--atctctctcttaaca---cattctctctcgtctaaataatttattttaatcatttattcatcattc--tctcatctaa 50700099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 39485528 - 39485469
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||| || |||||||||||||||||| ||| ||||| | |||| |||||||||||||||    
T  39485528 tctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaatga 39485469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 39994192 - 39994250
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||| ||||||| ||| |||||||| |||| ||||| || ||||||||||||||||||    
T  39994192 tttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaat 39994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 46348481 - 46348391
Alignment:
Q  340 ttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||| ||||||| ||||||||  |  |||| ||||| ||||||||| ||||| ||||| ||| || || |||||| |||||||||||||||    
T  46348481 ttgtctctatctatctcttaatcattcattctctctcatttaaatagtttatcttaataattcattcatcattctctctcatctaaaatga 46348391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 47548868 - 47548928
Alignment:
Q  370 atctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||||| || |||||||||||||||||| ||  || || |||||| |||||||||||||||    
T  47548868 atctctcatctaaataatttattttaatcatccattcaacattctctctcatctaaaatga 47548928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 4835070 - 4834969
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| |||||||||||||||||||||||||||||| |||| ||| | |  |||||||||||||||||| ||| || || |||||| |||||||||||||    
T  4835070 cattgatacttttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcattcattcatcattctctctcatctaaaat 4834971  T
Q  429 ga 430  Q
    ||    
T  4834970 ga 4834969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 41474366 - 41474310
Alignment:
Q  341 tgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||| | ||||||||||||  |||||||||||||||||||||||||||||||    
T  41474366 tgtgtctatttctctcttaacaacttattatctcttatttaaataatttattttaat 41474310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 35793178 - 35793232
Alignment:
Q  347 tatctttctcttaacaacgcattatctcttatttaaataatttattttaattatt 401  Q
    ||||| ||||||||| || |||||||||| |||||||||||||||||||||||||    
T  35793178 tatctctctcttaactactcattatctctcatttaaataatttattttaattatt 35793232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 6261083 - 6261141
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    ||||| || |||||||||||||| ||||||| ||| || ||||||||||||||||||||    
T  6261083 tctctcatctaaataatttatttgaattattcatcaactattctttctcatctaaaatg 6261141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 33938682 - 33938624
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||  |||| ||||| || ||||||||||||||||||    
T  33938682 tttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaat 33938624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 22786584 - 22786637
Alignment:
Q  377 atttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    |||||||||||||| |||||||||||||  | |||||||| |||||||||||||    
T  22786584 atttaaataatttactttaattatttatttatcattctttttcatctaaaatga 22786637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 44077798 - 44077744
Alignment:
Q  375 ttatttaaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    |||| ||||||||||||||||||||||||| || || ||| | ||||||||||||    
T  44077798 ttatctaaataatttattttaattatttattcatcactctctttcatctaaaatg 44077744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 18267917 - 18267856
Alignment:
Q  366 cattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaa 427  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||    
T  18267917 cattatcttttatttaaataatttattttaattattaatccatcattctctcttatctaaaa 18267856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 33953161 - 33953218
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||    
T  33953161 tctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaat 33953218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 34928780 - 34928886
Alignment:
Q  324 gatgtcattggtacttttgtgtctatctttctcttaacaacgcattatctctt--atttaaataatttattttaattatttatccaccattctttctcat 421  Q
    |||||||||||||| ||||| |||||||  |||||||||||  ||| ||||||  || |||||||||||||||||| ||| ||  | |||||| ||||||    
T  34928780 gatgtcattggtacctttgtatctatct--ctcttaacaacttattctctctttcatctaaataatttattttaatcattcatttatcattctctctcat 34928877  T
Q  422 ctaaaatga 430  Q
    |||||||||    
T  34928878 ctaaaatga 34928886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 37515652 - 37515594
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||||||| | || ||||||||||||||||||    
T  37515652 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaat 37515594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 429
Target Start/End: Original strand, 22653508 - 22653571
Alignment:
Q  366 cattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaatg 429  Q
    |||| |||||||| |||||||| ||||||||| ||| |||||  ||||||||||||||||||||    
T  22653508 cattttctcttatctaaataatctattttaatcattcatccattattctttctcatctaaaatg 22653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Complemental strand, 22029898 - 22029851
Alignment:
Q  381 aaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  22029898 aaataatttattttaatcattcatccaacattctctctcatctaaaat 22029851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 19824612 - 19824674
Alignment:
Q  366 cattatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||| ||||| || |||||||||||||||||| ||| ||| | |||||| |||||||||||||    
T  19824612 cattctctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaat 19824674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 22658866 - 22658919
Alignment:
Q  377 atttaaataatttattttaattatttatccaccattctttctcatctaaaatga 430  Q
    ||||||||||||||||||||| ||| || || |||||| | |||||||||||||    
T  22658866 atttaaataatttattttaatcattcattcatcattctctttcatctaaaatga 22658919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 27554981 - 27554924
Alignment:
Q  371 tctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    ||||| || |||||||| |||||||||||||||| || |||| | |||||||||||||    
T  27554981 tctctcatctaaataatctattttaattatttattcatcattttctctcatctaaaat 27554924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 37480284 - 37480346
Alignment:
Q  338 ttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaattattt 402  Q
    ||||||||||||||  ||||||||||| |||| ||||| || ||| |||||||||||||| ||||    
T  37480284 ttttgtgtctatct--ctcttaacaactcattctctctcatctaagtaatttattttaatcattt 37480346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 9928262 - 9928320
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  9928262 tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaat 9928320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 9549359 - 9549459
Alignment:
Q  329 cattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaa----ttatttatccaccattctttctcatcta 424  Q
    ||||||||  ||||||| |||||  ||||||||||| |||| ||||| ||||||||||||||||||||    | ||| || ||||||||| |||||||||    
T  9549359 cattggtatctttgtgtttatct--ctcttaacaactcattctctctaatttaaataatttattttaatcattcattcattcaccattctctctcatcta 9549456  T
Q  425 aaa 427  Q
    |||    
T  9549457 aaa 9549459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 22469700 - 22469758
Alignment:
Q  339 tttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||||||||||| | |||||||||| |||| ||||| || ||||||||||||||||||    
T  22469700 tttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaat 22469758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 26847169 - 26847230
Alignment:
Q  367 attatctcttatttaaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||||||||||| |||||||||||||||| | ||| ||| | |||||| |||||||||||||    
T  26847169 attatctcttatctaaataatttattttactcattcatctatcattctctctcatctaaaat 26847230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 457691 - 457739
Alignment:
Q  380 taaataatttattttaattatttatccaccattctttctcatctaaaat 428  Q
    |||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  457691 taaataatttattttaatcattcatccatcattctctctcatctaaaat 457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 7506641 - 7506691
Alignment:
Q  347 tatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    ||||| |||||||||||| |||| ||||| || ||||||||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaat 7506691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 15079 - 15150
Alignment:
Q  326 tgtcattggtacttttgtgtctatctttctcttaacaacgcattatctcttatttaaataatttattttaat 397  Q
    |||||| ||||  ||||||||||||| | |||||||||| |||| ||||| ||  |||||||||||||||||    
T  15079 tgtcataggtaactttgtgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaat 15150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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