View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_22 (Length: 416)
Name: NF19726_low_22
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 4113499 - 4113134
Alignment:
| Q |
20 |
ctacttctacctaggagaatacatttattcactattccagtaatgtaaaaacaacacgtagcttcataatagaccaaacatcatcatcttaatcaatgga |
119 |
Q |
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| T |
4113499 |
ctacttctacctaggagaatacatttattcactattccagtaatgtaaaaacaacacgtagcttcataatagaccaaacatcatcatcttaatcaatgga |
4113400 |
T |
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| Q |
120 |
aaagagtctgatcaaagtgccacacacctacaaccaacaaaaacaaatgttctgttaaacctcattcatttgattttcatattaccaatgttagtggagg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4113399 |
gaagagtctgatcaaagtgccacacacctacaaccaacaaaaacaaatgttctgttaaacctcattcatttgattttcatattaccaatggtagtggagg |
4113300 |
T |
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| Q |
220 |
aaatatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctgtgcaaggaaaatacatataag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4113299 |
aaatatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctgtgcaaggaaaatacatataag |
4113200 |
T |
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| Q |
320 |
aacaagaagaaaaaattggaaaatattgatacacttagtaacttttggatctaaagatttttcatgtca |
388 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4113199 |
aaca---agaaaaaattggaaaattttgatacacttagtaacttttggatctaaagatttttcatgtca |
4113134 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 25792490 - 25792566
Alignment:
| Q |
222 |
atatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctg |
298 |
Q |
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||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25792490 |
atatacataccatgaccctttccaacccttctcaattgagacacatactctgatatcttcttaattgattcaacctg |
25792566 |
T |
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