View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_23 (Length: 411)
Name: NF19726_low_23
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 31836205 - 31835807
Alignment:
| Q |
18 |
cttttataggccttttcacttcaatcttcaattcctgcatcagtgaatctaaccaggcagcttgacaagctgcaagagatccttatgatgatcacctttt |
117 |
Q |
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| T |
31836205 |
cttttataggccttttcacttcaatcttcaattcctgcatcagtgaatctaaccaggcagcttgacaagctgcaagagatccttatgatgatcacctttt |
31836106 |
T |
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| Q |
118 |
cg---------------tgtcagtggtgatcattcatcttcttttcaatcacttagtatgttttcaatttctttcttggtttttggtttgtatttctaaa |
202 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
31836105 |
cgatcttatcttcctcgtgtcagtggtgatcattcatcttcttttcaatcacttagtatgttttcaatttctttcttggtttttggtttgtgtttctaga |
31836006 |
T |
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| Q |
203 |
atgactcttgtaaaatgcttgaaaaattgaactctataaggtattttctattcttgagtttgttggttaacatcttggagaaagcttttggagcatgtat |
302 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836005 |
atgactcttgtaaattgcttgaaaaattgaactctataaggtattttctattcttgagtttgttggttaacatcttggagaaagcttttggagcatgtat |
31835906 |
T |
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| Q |
303 |
caaaagactcttgtttgtatttgtatggtttgttaatcctttaggattattacgttgtccctaattttgttttttgtttatgtggtttcttctcctttg |
401 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31835905 |
caaaagactctcgtttgtatttgaatggtttgttaatcctttaggattgttactttgtccctaattttgttttttgtttatgtggtttcttctcctttg |
31835807 |
T |
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