View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_low_24 (Length: 398)
Name: NF19726_low_24
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_24 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold0536 (3 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 48912396 - 48911999
Alignment:
| Q |
1 |
ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48912396 |
ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcattctccgtc |
48912297 |
T |
|
| Q |
101 |
cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48912296 |
cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttc |
48912197 |
T |
|
| Q |
201 |
caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
48912196 |
caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctcagccttctc |
48912097 |
T |
|
| Q |
301 |
ttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912096 |
ttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
48911999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 23 - 398
Target Start/End: Original strand, 48958294 - 48958669
Alignment:
| Q |
23 |
ttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaaccc |
122 |
Q |
| |
|
||||||||||| || |||||||||| || || || |||||||| ||| |||||||||||||| | || | || ||| |||||| ||||||||||||| |
|
|
| T |
48958294 |
ttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttcttctcaggaacaaccc |
48958393 |
T |
|
| Q |
123 |
atatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccga |
222 |
Q |
| |
|
||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||| ||| || |
|
|
| T |
48958394 |
atacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactga |
48958493 |
T |
|
| Q |
223 |
gttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataaga |
322 |
Q |
| |
|
||||| | ||| |||| |||||||||| ||| | |||||||| |||||| |||| | ||| |||| || |||||||||||| ||| |||||||||| |
|
|
| T |
48958494 |
gttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctgatttctcttgaatggtttggcgaataaga |
48958593 |
T |
|
| Q |
323 |
gaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
||||| ||||||||||||||| | ||||||| || |||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
48958594 |
gaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagtt |
48958669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 345
Target Start/End: Original strand, 48965478 - 48965798
Alignment:
| Q |
25 |
cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat |
124 |
Q |
| |
|
||||||||| || |||||||||| || |||||||| ||||| |||| |||||||||||| | |||| ||| ||| || || |||| ||||||| |
|
|
| T |
48965478 |
cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccat |
48965577 |
T |
|
| Q |
125 |
atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt |
224 |
Q |
| |
|
|| || || |||| ||||||||| || | ||||||||||||||||| ||||||||| | || |||| |||||||||||| |||||||| ||| |||| |
|
|
| T |
48965578 |
ataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagt |
48965677 |
T |
|
| Q |
225 |
tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagaga |
324 |
Q |
| |
|
||| | | || || || ||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |||||||||||||| |||| | ||||||||||| |
|
|
| T |
48965678 |
tatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagaga |
48965777 |
T |
|
| Q |
325 |
agctggaccaagatgccaagc |
345 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48965778 |
agctggaccaagatgccaagc |
48965798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 209 - 398
Target Start/End: Original strand, 48962627 - 48962816
Alignment:
| Q |
209 |
atgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatag |
308 |
Q |
| |
|
||||||| ||| ||||||| | | || || |||||||| | || |||||| || || | |||||||||||| | ||| || | |||||||||||||| | |
|
|
| T |
48962627 |
atgtacaacactgagttatgtcgctttgaattaagccaccacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacgg |
48962726 |
T |
|
| Q |
309 |
ttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48962727 |
atttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagtt |
48962816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 41 - 369
Target Start/End: Original strand, 48951399 - 48951727
Alignment:
| Q |
41 |
ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg |
140 |
Q |
| |
|
|||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| ||| |||||||| || ||||||||||||||||| | || | |
|
|
| T |
48951399 |
ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg |
48951498 |
T |
|
| Q |
141 |
atgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagtt |
240 |
Q |
| |
|
|| |||| ||| ||| ||||||||||| | ||| ||||| | || | ||| ||||||||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
48951499 |
attcttctatcgcgcttgcaatctcatacaattgcttatctgggaagtaacaaattgttccaaagctaatgtaaagcactgagttatcttgcttcgagtt |
48951598 |
T |
|
| Q |
241 |
aagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagatgc |
340 |
Q |
| |
|
| |||| ||||| ||| ||||| |||| | || || ||||||| | ||| ||||||||| ||||| |||||| |||||| || |||||||||||| |
|
|
| T |
48951599 |
caaccaattcaaatacttttgcacgctcatttcgctttcccctcctctatttgccttctcttgagtagttttgcgaacaagagaggccggaccaagatgc |
48951698 |
T |
|
| Q |
341 |
caagctttgtgacaagtagttttctcgta |
369 |
Q |
| |
|
||||| ||||||| | ||||||||||| |
|
|
| T |
48951699 |
caagccttgtgaccgatggttttctcgta |
48951727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 48961425 - 48961567
Alignment:
| Q |
5 |
cccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtt |
104 |
Q |
| |
|
|||||||| |||| | ||||||||||| | || ||||||||||||| || || |||||||| || |||||||||||||| | |||| | | ||| || |
|
|
| T |
48961425 |
cccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttccctt |
48961524 |
T |
|
| Q |
105 |
tcttttcaggaacaacccatatgaattcgtgactcgatgcttc |
147 |
Q |
| |
|
| || |||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48961525 |
ttttctcaggaacaacccatacaaattcgtgacccgatgcttc |
48961567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 6562 - 6165
Alignment:
| Q |
1 |
ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtc |
100 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | |||| || || |
|
|
| T |
6562 |
ccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcatcttctttc |
6463 |
T |
|
| Q |
101 |
cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttc |
200 |
Q |
| |
|
| |||||| |||||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| |||||||||||||||| ||| | ||| ||||| |
|
|
| T |
6462 |
cctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttc |
6363 |
T |
|
| Q |
201 |
caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctc |
300 |
Q |
| |
|
||||||||||||||| ||| ||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||| | || ||| ||||||||||| || |
|
|
| T |
6362 |
caaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgctttttc |
6263 |
T |
|
| Q |
301 |
ttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
||||| |||| | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6262 |
ttgaacagttctacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagtt |
6165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 10544 - 10149
Alignment:
| Q |
1 |
ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtc |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | |||||||||||||||||||| | | |||| ||| || |
|
|
| T |
10544 |
ccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactctcattctctttc |
10445 |
T |
|
| Q |
101 |
cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttc |
200 |
Q |
| |
|
| |||||| ||||||||||| |||| ||||||| || ||||||||| | || ||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
10444 |
cctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttc |
10345 |
T |
|
| Q |
201 |
caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctc |
300 |
Q |
| |
|
||||||| ||||||| ||| || ||||| | ||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
10344 |
caaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctctctgttttctc |
10247 |
T |
|
| Q |
301 |
ttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
||||| |||| | |||| |||| ||||||||| ||||||||||||||| |||| |||||||||| |||||||||||| | || || ||||||||||| |
|
|
| T |
10246 |
ttgaacagttctacgaacaagataagctggactaagatgccaagctttctgacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagtt |
10149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 1319 - 1164
Alignment:
| Q |
198 |
ttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgcttt |
297 |
Q |
| |
|
|||||||||||||||| | || ||||||||| | || ||||| |||||| | || ||| |||||||||| |||| |||||| || | |||||| |
|
|
| T |
1319 |
ttccaaagcatatgtagagtactgagttatctcgctttgagttgagccaagttaagaacttttgcacactcaacgtgctcttttctcccctatttgcttt |
1220 |
T |
|
| Q |
298 |
ctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgac |
353 |
Q |
| |
|
||||||| | ||| |||||| |||||| ||||| |||||| ||||||| ||||||| |
|
|
| T |
1219 |
ctcttgagtggttttgcgaacaagagatgctgggccaagaagccaagccttgtgac |
1164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 39 - 374
Target Start/End: Complemental strand, 12590182 - 12589847
Alignment:
| Q |
39 |
ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact |
138 |
Q |
| |
|
||||||||||||| || | ||||||||||||| ||| ||||| ||| | |||| ||| ||| ||| || || |||| |||||||| ||||||||| | |
|
|
| T |
12590182 |
ttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttctcgggaataacccatacgaattcgtggcc |
12590083 |
T |
|
| Q |
139 |
cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag |
238 |
Q |
| |
|
|||||||| || || |||| ||||||||||||||||||||| || |||| ||| ||| |||||||||||||||| ||| ||||||||| | |||||| |
|
|
| T |
12590082 |
tgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgag |
12589983 |
T |
|
| Q |
239 |
ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagat |
338 |
Q |
| |
|
|| |||||||||| |||||| ||||| ||||||||||||| | ||| || | |||||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
12589982 |
tttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagat |
12589883 |
T |
|
| Q |
339 |
gccaagctttgtgacaagtagttttctcgtagtgtt |
374 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||||| |
|
|
| T |
12589882 |
gccaagccttgtgacctgtggttttctcatagtgtt |
12589847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 353
Target Start/End: Complemental strand, 12483477 - 12483163
Alignment:
| Q |
39 |
ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact |
138 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |||||||||||||| || | |||| ||| ||| ||| || |||||||||||||||||||||| | || |
|
|
| T |
12483477 |
ttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaattttttacc |
12483378 |
T |
|
| Q |
139 |
cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag |
238 |
Q |
| |
|
||||||||| || ||||| | ||| || ||||| |||||||| || |||| ||| |||| |||||||||||||||| ||| || || ||||| || ||| |
|
|
| T |
12483377 |
cgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgag |
12483278 |
T |
|
| Q |
239 |
ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagat |
338 |
Q |
| |
|
|| |||||||| |||||| ||||| |||||||||||||| | ||| |||| ||| || ||||||| |||| | |||||| ||| |||||| | || |
|
|
| T |
12483277 |
tttagccaactttgacactcatgcacgctcacaacactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaat |
12483178 |
T |
|
| Q |
339 |
gccaagctttgtgac |
353 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
12483177 |
gccaagccttgtgac |
12483163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 39 - 398
Target Start/End: Original strand, 13440363 - 13440722
Alignment:
| Q |
39 |
ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact |
138 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||| || ||| | |||| || ||| |||||| ||||||||||||||||||||| |||||| |
|
|
| T |
13440363 |
ttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgact |
13440462 |
T |
|
| Q |
139 |
cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag |
238 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||| || |||| ||||||||| |||||||||| |||||||||| ||| | ||| |
|
|
| T |
13440463 |
agatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagttaactttctctgag |
13440562 |
T |
|
| Q |
239 |
ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagat |
338 |
Q |
| |
|
| |||||||||| || ||||||| ||||| ||| ||| | ||| |||| ||||||||||||||| ||| | ||||||||||||| |||||| |||| |
|
|
| T |
13440563 |
tcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagat |
13440662 |
T |
|
| Q |
339 |
gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
||||| | ||||||| || |||||||| ||||||| ||| ||||||| |||||||||| |
|
|
| T |
13440663 |
gccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagtt |
13440722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 13448512 - 13448861
Alignment:
| Q |
25 |
cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat |
124 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| || ||||| ||||||||||| ||||| | |||| || ||| |||||| ||||||||||||||| |
|
|
| T |
13448512 |
cttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctcaggaacaacccat |
13448611 |
T |
|
| Q |
125 |
atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt |
224 |
Q |
| |
|
|||||| ||||| |||||||| ||| | || || ||||| || ||||||||||| ||||||| ||||||||| |||||||||| ||| |||| |
|
|
| T |
13448612 |
atgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaacactgagt |
13448711 |
T |
|
| Q |
225 |
tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagaga |
324 |
Q |
| |
|
|| || | || | |||||||||| | |||||||||| ||||| ||| ||| | ||| |||| || |||||||||| |||| ||||||||||||| |
|
|
| T |
13448712 |
taactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagaga |
13448811 |
T |
|
| Q |
325 |
agctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgtt |
374 |
Q |
| |
|
|| |||||||||||||||| | ||||||| || | |||||||||||||| |
|
|
| T |
13448812 |
agttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgtt |
13448861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 387
Target Start/End: Original strand, 13455154 - 13455345
Alignment:
| Q |
196 |
gcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgct |
295 |
Q |
| |
|
||||||||| |||||||||| || |||||| || || |||| |||||| |||| |||||||| ||| |||||| | ||| | ||| |||| || | |
|
|
| T |
13455154 |
gcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgat |
13455253 |
T |
|
| Q |
296 |
ttctcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttc |
387 |
Q |
| |
|
|| ||||||| ||| ||| ||||||||||| |||||||| ||||||| | ||||||| || ||||| |||||||||| ||| ||||||| |
|
|
| T |
13455254 |
ttttcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttc |
13455345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 13455000 - 13455087
Alignment:
| Q |
42 |
tctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa |
129 |
Q |
| |
|
|||||||||| ||||| |||||||| |||| |||||||||||| | |||| || ||| |||||| || ||||||||||||||||| |
|
|
| T |
13455000 |
tctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa |
13455087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 398
Target Start/End: Original strand, 28385483 - 28385856
Alignment:
| Q |
25 |
cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat |
124 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||| ||| ||||||||||| ||||| | |||| || ||| |||||| ||||||||||||||| |
|
|
| T |
28385483 |
cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat |
28385582 |
T |
|
| Q |
125 |
atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt |
224 |
Q |
| |
|
|||||| ||||| |||||||| | |||| ||||||||||| ||||||||||| || ||||| | ||||||||| ||||||||||| || |||| |
|
|
| T |
28385583 |
atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt |
28385682 |
T |
|
| Q |
225 |
tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagaga |
324 |
Q |
| |
|
|| || | | || || ||||| ||| ||||||||| | |||||| |||||| | ||| ||| |||||||||||||| |||| | ||||||| || |
|
|
| T |
28385683 |
taactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagttttacgaataaagga |
28385782 |
T |
|
| Q |
325 |
agctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
|| |||||||||||||||||| ||||||| || |||||||||||||||| || | ||||||| || ||||||| |
|
|
| T |
28385783 |
agttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagtt |
28385856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 398
Target Start/End: Original strand, 12540848 - 12541207
Alignment:
| Q |
39 |
ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact |
138 |
Q |
| |
|
||||||| ||||| ||||| |||| ||| ||||||||||| |||||| | |||| || ||| | |||| ||||||||||||||||||||| ||||| |
|
|
| T |
12540848 |
ttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgacc |
12540947 |
T |
|
| Q |
139 |
cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag |
238 |
Q |
| |
|
| | |||| | | || ||||||||||| |||||||| || | |||||| | ||||||||| |||||||||||||| |||||| |||| | ||| |
|
|
| T |
12540948 |
cattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgag |
12541047 |
T |
|
| Q |
239 |
ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagat |
338 |
Q |
| |
|
|| ||||| || | |||||||| | ||| || ||| ||| | ||| ||| ||||||||||||||| || | |||||| ||||| ||||||||||| |
|
|
| T |
12541048 |
ttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagat |
12541147 |
T |
|
| Q |
339 |
gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| || | ||||||| || ||||||| |
|
|
| T |
12541148 |
gccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagtt |
12541207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 398
Target Start/End: Complemental strand, 12641494 - 12641135
Alignment:
| Q |
39 |
ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact |
138 |
Q |
| |
|
|||||||||| || || || |||||||| |||||||||||||||||| | |||| | ||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
12641494 |
ttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacc |
12641395 |
T |
|
| Q |
139 |
cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag |
238 |
Q |
| |
|
|| ||| || |||| ||||||||| |||||||||||||| || |||| | | ||| ||||| |||||||| | ||| || |||||||| || || |
|
|
| T |
12641394 |
tgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaa |
12641295 |
T |
|
| Q |
239 |
ttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctgtgctttctcttgaatagttgtgcgaataagagaagctggaccaagat |
338 |
Q |
| |
|
|| ||||||| | ||||| ||| | || || |||||||| | || ||| | |||||||| || |||| ||||||||||| ||| ||||||||||| |
|
|
| T |
12641294 |
ttgagccaacctagacacttatgcgcgctaaccacactctcattgcccctcatagatttctcttcaaaagttttgcgaataagacaagttggaccaagat |
12641195 |
T |
|
| Q |
339 |
gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagtt |
398 |
Q |
| |
|
||||||| |||| || | |||||||| ||||||| ||| | |||||||| ||||||| |
|
|
| T |
12641194 |
gccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagtt |
12641135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 3417557 - 3417334
Alignment:
| Q |
25 |
cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat |
124 |
Q |
| |
|
||||||||| || ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || |||| || | | |||||| ||| ||||||||||| |
|
|
| T |
3417557 |
cttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccat |
3417458 |
T |
|
| Q |
125 |
atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt |
224 |
Q |
| |
|
|||||| ||||| ||||||||| || || | ||||||||||| ||||||||||| || |||| | ||||||||| |||||||||| ||| |||| |
|
|
| T |
3417457 |
atgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagt |
3417358 |
T |
|
| Q |
225 |
tatcttgtttcgagttaagccaac |
248 |
Q |
| |
|
|| |||||| ||||| ||||||| |
|
|
| T |
3417357 |
taacttgttgtgagttgagccaac |
3417334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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