View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_3 (Length: 753)
Name: NF19726_low_3
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 475
Target Start/End: Original strand, 35905010 - 35905473
Alignment:
| Q |
12 |
tcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggctaaatttgcaccactgcccatagtactct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905010 |
tcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggctaaatttgcaccactgcccatagtactct |
35905109 |
T |
|
| Q |
112 |
tccctgatcctgttgatttcgttccggttgtgtgagaatttccatagagaggcaaccaacttgatgtggtgtttgtgtatgaacctggtatcagatataa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905110 |
tccctgatcctgttgatttcgttccggttgtgtgagaatttccatagagaggcaaccaacttgatgtggtgtttgtgtatgaacctggtatcagatataa |
35905209 |
T |
|
| Q |
212 |
aattagttaattacactagttagttgttattctcattggctatataaatcttatatactcttttagcgtaattgacgtttcatattctctcgttatgaat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
35905210 |
aattagttaattacactagttagttgttattctcattggctatataaatcttatatactcttttagcgtaattcacgtttcatattctctcgttatcaat |
35905309 |
T |
|
| Q |
312 |
ataattttcattttactttttcttatcaaagacttctatcaagaataacattacctggtgctctcttcttcctgtgatgaacagcaacacatatagcagc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905310 |
ataattttcattttactttttcttatcaaagacttctatcaagaataacattacctggtgctctcttcttcctgtgatgaacagcaacacatatagcagc |
35905409 |
T |
|
| Q |
412 |
aacaattgcaaaacctgccgcaccaccggcagcaccaccaataacaaaactcttattatgacca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905410 |
aacaattgcaaaacctgccgcaccaccggcagcaccaccaataacaaaactcttattatgacca |
35905473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 500 - 736
Target Start/End: Original strand, 35905499 - 35905735
Alignment:
| Q |
500 |
cctgattgtcatgttcaatcatcatatcagaaggttgaggatttggtccagacaaatcagtatcattgagtttgaatatctcaacaccattgagtatagc |
599 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905499 |
cctgattgtcatgttcaatcatcatatcagaaggttgaggatttggtccagacaaatcagtatcattgagtttgaatatctcaacaccattgagtatagc |
35905598 |
T |
|
| Q |
600 |
atcataatattccggctttgaatcgggcgatggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataa |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905599 |
atcataatattccggctttgaatcgggcgatggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataa |
35905698 |
T |
|
| Q |
700 |
gtaggcactcctttaccgcctgtccaaccaataacat |
736 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
35905699 |
gtaggcactcctttactgcctgtccaaccaataacat |
35905735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 30522111 - 30522167
Alignment:
| Q |
304 |
ttatgaatataattttcattttactttttct-tatcaaagacttctatcaagaataa |
359 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |||||| |||||||||||| ||||| |
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|
| T |
30522111 |
ttatcaatataatttccattttactttttctatatcaatgacttctatcaaaaataa |
30522167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 733
Target Start/End: Complemental strand, 47623900 - 47623696
Alignment:
| Q |
529 |
gaaggttgaggatttggtccagacaaatcagtatcattgagtttgaatatctcaacaccattgagtatagcatcataatattccggctttgaatcgggcg |
628 |
Q |
| |
|
||||| |||||||| || |||||||| || || |||||||| ||||||||||| || |||||||||||||||||||| | | || ||||| || || | |
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| T |
47623900 |
gaaggctgaggattggggccagacaagtccgtgtcattgagcttgaatatctccaccccattgagtatagcatcatagaactgtggttttgagtcaggtg |
47623801 |
T |
|
| Q |
629 |
atggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataagtaggcactcctttaccgcctgtccaacc |
728 |
Q |
| |
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|||||| | ||||||||||||||| ||||| || || ||||| ||||| | |||||| |||| ||||| | || |||||||| |||||||| || |
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| T |
47623800 |
ctggatgtagtgcaagccaaagttgctcatccccctccccgtcttggacatataccacatagtcctggtaagttgtcatgcctttacctcctgtccaccc |
47623701 |
T |
|
| Q |
729 |
aataa |
733 |
Q |
| |
|
||||| |
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|
| T |
47623700 |
aataa |
47623696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 47624233 - 47624163
Alignment:
| Q |
12 |
tcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggc |
82 |
Q |
| |
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||||||||| | |||||||||||||| ||||||||||| || ||||| ||||| || ||||| | |||||| |
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| T |
47624233 |
tcatcaaaactgttggttgcttgctttatctcttgtaacgaaaaatagcgacatagaccttgggtcatggc |
47624163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 483972 - 484018
Alignment:
| Q |
313 |
taattttcattttactttt-tcttatcaaagacttctatcaagaata |
358 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
483972 |
taattttcattttacttttctcttatcaatgacttctattaagaata |
484018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 13868847 - 13868806
Alignment:
| Q |
214 |
ttagttaattacactagttagttgttattctcattggctata |
255 |
Q |
| |
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||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
13868847 |
ttagttagttacattagttagtcgttattctcattggctata |
13868806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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