View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_32 (Length: 370)
Name: NF19726_low_32
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 117 - 353
Target Start/End: Original strand, 35905499 - 35905735
Alignment:
| Q |
117 |
cctgattgtcatgttcaatcatcatatcagaaggttgaggatttggtccagacaaatcagtatcattgagtttgaatatctcaacaccattgagtatagc |
216 |
Q |
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| T |
35905499 |
cctgattgtcatgttcaatcatcatatcagaaggttgaggatttggtccagacaaatcagtatcattgagtttgaatatctcaacaccattgagtatagc |
35905598 |
T |
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| Q |
217 |
atcataatattccggctttgaatcgggcgatggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataa |
316 |
Q |
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| T |
35905599 |
atcataatattccggctttgaatcgggcgatggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataa |
35905698 |
T |
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| Q |
317 |
gtaggcactcctttaccgcctgtccaaccaataacat |
353 |
Q |
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| T |
35905699 |
gtaggcactcctttactgcctgtccaaccaataacat |
35905735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 35905397 - 35905473
Alignment:
| Q |
16 |
cacatatagcagcaacaattgcaaaacctgccgcaccaccggcagcaccaccaataacaaaactcttattatgacca |
92 |
Q |
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| T |
35905397 |
cacatatagcagcaacaattgcaaaacctgccgcaccaccggcagcaccaccaataacaaaactcttattatgacca |
35905473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 350
Target Start/End: Complemental strand, 47623900 - 47623696
Alignment:
| Q |
146 |
gaaggttgaggatttggtccagacaaatcagtatcattgagtttgaatatctcaacaccattgagtatagcatcataatattccggctttgaatcgggcg |
245 |
Q |
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| T |
47623900 |
gaaggctgaggattggggccagacaagtccgtgtcattgagcttgaatatctccaccccattgagtatagcatcatagaactgtggttttgagtcaggtg |
47623801 |
T |
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| Q |
246 |
atggatgcaatgcaagccaaagttgatcatcacctgcctgatcttgaacataaatcacataatccttataagtaggcactcctttaccgcctgtccaacc |
345 |
Q |
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|||||| | ||||||||||||||| ||||| || || ||||| ||||| | |||||| |||| ||||| | || |||||||| |||||||| || |
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| T |
47623800 |
ctggatgtagtgcaagccaaagttgctcatccccctccccgtcttggacatataccacatagtcctggtaagttgtcatgcctttacctcctgtccaccc |
47623701 |
T |
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| Q |
346 |
aataa |
350 |
Q |
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||||| |
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| T |
47623700 |
aataa |
47623696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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