View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_33 (Length: 369)
Name: NF19726_low_33
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 51054383 - 51054034
Alignment:
| Q |
1 |
tcttttttcttcacatgttttgaaaactcaattcgaaacggtaattcgttaagattcacacattgtgatttgaaatcgaagcttaacgatatcgtttttg |
100 |
Q |
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| T |
51054383 |
tcttttttcttcacatgttttgaaaactcaattcgaaacggtaattcgttaagattcacacattgtgatttgaaatcgaagcttaacgatatcgtttttg |
51054284 |
T |
|
| Q |
101 |
gttcattgttgagttgnnnnnnngcaggtttaagaagaaacgttgatacgttcatggagaagagcgaaacgacgctggatttagctaatcggaaatttgc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51054283 |
gttcattgttgagttgcttttttgcaggtttaagaagaaacgttgatacgttcatggagaagagcgaaacgacgctggatttagctaatcggaaatttgc |
51054184 |
T |
|
| Q |
201 |
gcggcaattggatttcgccgccgcatgtggaggtccgtcgtacctgacattgtcgccaccgacgccgcagtcactgtcaaaaaccattccacgacctccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51054183 |
gcggcaattggatttcgccgccgcatgtggaggtccgtcgtacctgacattgtcgccaccgacgccgcagtcactgtcaaaaaccattccacgacctccg |
51054084 |
T |
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| Q |
301 |
acaccgtcgtatttgccacctccggcgcaaatgcatttggattttcagtc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51054083 |
acaccgtcgtatttgccacctccggcgcaaatgcatttggattttcagtc |
51054034 |
T |
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