View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_low_34 (Length: 367)
Name: NF19726_low_34
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_34 |
 | |
|
| [»] scaffold0989 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 40 - 351
Target Start/End: Original strand, 43147585 - 43147897
Alignment:
| Q |
40 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctccttttct |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43147585 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctccttttct |
43147684 |
T |
|
| Q |
140 |
aacaatattcccctcactttggaagcatggtg-ttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtgttttaaatggtg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43147685 |
aacaatattcccctcactttggaagcatggtggttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtgttttaaatggtg |
43147784 |
T |
|
| Q |
239 |
ggaggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcattgtaacagttatgtgatataat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43147785 |
ggaggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcattgtaacagttatgtgatataat |
43147884 |
T |
|
| Q |
339 |
ttgggttaaatat |
351 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43147885 |
ttgggttaaatat |
43147897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 317
Target Start/End: Original strand, 43159051 - 43159224
Alignment:
| Q |
150 |
ccctcactttggaagcatgg-tgttggtagatcaaattgatctaatttattattctttggtgcatttttggtcgagtg--------ttttaaatggtggg |
240 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| | || || ||||| |||||||| |
|
|
| T |
43159051 |
ccctcactttggaagcatgggtgttggtagatcaaattgatctaatttatt---ctttggtgcattcttgattgattgattgattgttttagatggtggg |
43159147 |
T |
|
| Q |
241 |
aggaatcctagttccattttttcattgcccattcaatccattttatttttcagtgcaaaccttcctatggattcatt |
317 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||| |||| |||||| |
|
|
| T |
43159148 |
aggaatcttagttccattttttcattatccattcaatccatattatttttcggtgcaagccttcccatggcttcatt |
43159224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 3507917 - 3507976
Alignment:
| Q |
40 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcct |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
3507917 |
gaatcaaattattctctcaagcaatagaaattgttcttctctcatatattatctcctcct |
3507976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 26947017 - 26946934
Alignment:
| Q |
40 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactat |
123 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| || ||||| ||| | ||| |||||||| |||| |||||||| ||||||||| |
|
|
| T |
26947017 |
gaatcaaagtattctctcaagtaataaaaatagttcttctctcaaatattccctcctcctaaatttctcacaaagtctcactat |
26946934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 3640030 - 3640126
Alignment:
| Q |
41 |
aatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaaatctcactatggcgttctcctttt |
137 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||| | | ||| |||||||||||||| ||| ||||| |||||||| |||||||||||| |
|
|
| T |
3640030 |
aatcaaagcattctctcacggaatagaaattgtccttctctttaatattctctcctcctcaatttctcccaaaagctcactataacgttctcctttt |
3640126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 1192 - 1119
Alignment:
| Q |
40 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaa |
113 |
Q |
| |
|
||||||||| || |||||||| |||||||||||| |||| ||| | ||| |||| |||| ||||||||||||| |
|
|
| T |
1192 |
gaatcaaagtatcctctcaagaaatagaaattgttattctctcaaatattctctcatcctaaattcctcacaaa |
1119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 18791013 - 18790940
Alignment:
| Q |
40 |
gaatcaaagcattctctcaagcaatagaaattgtacttctatcatacattatctcctcctcaattcctcacaaa |
113 |
Q |
| |
|
||||||||| || |||||||| ||||||||| || ||||| ||| ||||||||||||| |||| |||||||| |
|
|
| T |
18791013 |
gaatcaaagtatcctctcaagtaatagaaatagttcttctctcaagtattatctcctcctaaatttctcacaaa |
18790940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University