View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_low_37 (Length: 318)
Name: NF19726_low_37
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 47292600 - 47292305
Alignment:
| Q |
1 |
tcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47292600 |
tcagcttcaggagacgtataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcagggacataagcaacaataagttttcctgatt |
47292501 |
T |
|
| Q |
101 |
ttctgaaattcatgatttcccttcgaatttcatgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47292500 |
ttctgaaattcatgatttcctttcgaatttcatgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatat |
47292401 |
T |
|
| Q |
201 |
gcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47292400 |
gcggctttcaacaaattatcgcaaattcgaggcagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg |
47292305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 56209616 - 56209838
Alignment:
| Q |
18 |
ataaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatt |
117 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||| |||| || ||||||||| |||| |||||| || |||||||||||||| | |||| |
|
|
| T |
56209616 |
ataaatttcttcacatacacaagcaatgtaatattctttaactccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatt |
56209715 |
T |
|
| Q |
118 |
tcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaat |
216 |
Q |
| |
|
| |||||||||||||| ||||||||||||||| ||||||||| || |||| ||||| | || |||||||||||||||||||| || |||||||||| || |
|
|
| T |
56209716 |
tgccttcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatat |
56209815 |
T |
|
| Q |
217 |
tatcgcaaattcgaggcagagat |
239 |
Q |
| |
|
||||||||| | ||||||||||| |
|
|
| T |
56209816 |
tatcgcaaaattgaggcagagat |
56209838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 45863436 - 45863579
Alignment:
| Q |
94 |
cctgattttctgaaattcatgatttcccttcgaatttcatgag-tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
192 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || |||||||||||| ||||||||| || ||| |||||| | || |||||||||||| |
|
|
| T |
45863436 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
45863535 |
T |
|
| Q |
193 |
gatcatatgcggctttcaacaaattatcgcaaattcgaggcaga |
236 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||| | |||||| |
|
|
| T |
45863536 |
gatcataagctgctttcaacaaattatctcaaatttggggcaga |
45863579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 45883384 - 45883518
Alignment:
| Q |
94 |
cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
192 |
Q |
| |
|
||||||||||||||||| | ||| | ||||||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| ||||||||||| |
|
|
| T |
45883384 |
cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag |
45883483 |
T |
|
| Q |
193 |
gatcatatgcggctttcaacaaattatcgcaaatt |
227 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |
|
|
| T |
45883484 |
gatcataagctgctttcaacaaattatcgcaaatt |
45883518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 54303492 - 54303383
Alignment:
| Q |
24 |
ttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttccctt |
123 |
Q |
| |
|
||||| |||||||| ||| | |||||| |||||| |||| ||| |||| |||||||||| |||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
54303492 |
ttctttacatgcactagcgacgtaatactcttttactccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgcctt |
54303393 |
T |
|
| Q |
124 |
cgaatttcat |
133 |
Q |
| |
|
|||||||||| |
|
|
| T |
54303392 |
cgaatttcat |
54303383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 45863240 - 45863273
Alignment:
| Q |
24 |
ttcttcacatgcacaagcaatgtaatattctttt |
57 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
45863240 |
ttcttcacatgcacaagcaatgtaatattatttt |
45863273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 45882639 - 45882672
Alignment:
| Q |
24 |
ttcttcacatgcacaagcaatgtaatattctttt |
57 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
45882639 |
ttcttcacatgcgcaagcaatgtaatattctttt |
45882672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 7973526 - 7973742
Alignment:
| Q |
19 |
taaacttcttcacatgcacaagcaatgtaatattcttttcctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgattt |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
7973526 |
taaacttcttcacatgcacaacctatgtaatattcttttccacccattacagcgacataagcaacaataagtttacctgattttctgaaatttatgattt |
7973625 |
T |
|
| Q |
119 |
cccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaatt |
217 |
Q |
| |
|
||||| ||||||||| ||||||||| |||| ||| |||||| |||||||| || | |||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7973626 |
ccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaatt |
7973725 |
T |
|
| Q |
218 |
atcgcaaattcgaggca |
234 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
7973726 |
ctcgcaaatttgaggca |
7973742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 10520393 - 10520217
Alignment:
| Q |
64 |
attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gtttagcccaaccgcaatttaaacgat |
162 |
Q |
| |
|
|||| ||| |||||||| |||| | ||| || |||||||||||||| | |||| |||| |||| |||| | ||||||||||||| ||| ||||| | | |
|
|
| T |
10520393 |
attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt |
10520294 |
T |
|
| Q |
163 |
aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagat |
239 |
Q |
| |
|
||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| |||||| |
|
|
| T |
10520293 |
cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaagagat |
10520217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
183 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
246 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| |||||||||| |||||||||| |||||| |
|
|
| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 24348540 - 24348395
Alignment:
| Q |
94 |
cctgattttctgaaattcatgatttcccttcgaatttcat-gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
192 |
Q |
| |
|
||||||||| ||||||||| ||| | |||||||||||| | | |||| |||| || |||| ||||| || |||||| ||| | || ||||||| ||| |
|
|
| T |
24348540 |
cctgattttttgaaattcaagatgtgccttcgaatttcttctactttaccccacccacaatctaaactatcaatatggagatagaccccagaaattcgag |
24348441 |
T |
|
| Q |
193 |
gatcatatgcggctttcaacaaattatcgcaaattcgaggcagaga |
238 |
Q |
| |
|
||||||| || |||||||| ||||| ||||| ||| |||| ||||| |
|
|
| T |
24348440 |
gatcataggctgctttcaaaaaattctcgcatatttgaggtagaga |
24348395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University