View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_39 (Length: 304)
Name: NF19726_low_39
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 2785881 - 2785599
Alignment:
| Q |
12 |
cacttcacaaccattggctaatattcaaggagctgttagcatgggacaacaggttcccaggatgattcctactccaggaatgcctcaacaagtacagtca |
111 |
Q |
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| T |
2785881 |
cacttcacaaccatcggctaatattcaaggagctgttagcatgggacaacaggttcccagaatgattcctactccaggaatgcctcaacaagtacagtca |
2785782 |
T |
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| Q |
112 |
ggcatgcagccgcttgtgaataacgcagctgctactaatatgcccttatcacaacaggcaacttctgcacagccgcccaaatatattaaggcctgggagg |
211 |
Q |
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| T |
2785781 |
ggcatgcagccacttgtgaataacgcagctgctactaatatgcccttatcacaacagacaacttctgcacagccgcccaaatatattaaggcctgggagg |
2785682 |
T |
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| Q |
212 |
gaaccttgacaggtttaagacaaggacagccggtatttatcagcaaactcgaaggttataggagtttttctgcatccgagaca |
294 |
Q |
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| T |
2785681 |
gaaccttgacaggtttaagacaaggacagccggtatttatcagcaaactcgaaggttataggagtttttctgcatccgagaca |
2785599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 22520577 - 22520657
Alignment:
| Q |
73 |
atgattcctactccaggaatgcctcaacaagtacagtcaggcatgcagccgcttgtgaataacgcagctgctactaatatg |
153 |
Q |
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| T |
22520577 |
atgattcctactccaggaatacctcaacaggtacaatcaggtatgcaacctcttgtgaataatgcagctgctgctaatatg |
22520657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 22521982 - 22522019
Alignment:
| Q |
228 |
aagacaaggacagccggtatttatcagcaaactcgaag |
265 |
Q |
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| T |
22521982 |
aagacaaggacagccggtatttatcaccaaactcgaag |
22522019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 22520408 - 22520463
Alignment:
| Q |
15 |
ttcacaaccattggctaatattcaaggagctgttagcatgggacaacaggttccca |
70 |
Q |
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| T |
22520408 |
ttcacaaccaatagctaatctccaaggaggtgttagtatgggacaacaggttccca |
22520463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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