View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19726_low_4 (Length: 744)
Name: NF19726_low_4
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 47522565 - 47523120
Alignment:
| Q |
18 |
gtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47522565 |
gtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaa |
47522664 |
T |
|
| Q |
118 |
gcgaaactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactggg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47522665 |
gcgaaactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactggg |
47522764 |
T |
|
| Q |
218 |
aataagactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaagatttttatttttagtcacttaactgtttgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47522765 |
aataagactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaagatttttatttttagtcacttaattgtttgat |
47522864 |
T |
|
| Q |
318 |
tttgctgaaatgtgtgttcgtagtgaagtgattaatggaattgcgtttggtggattagttggtatgtttggtttgatttagatttctaagg-aaaaaatt |
416 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47522865 |
tttgctgaaatgtgtgtttgtagtgaagtgattattggaattgcgtttggtggattagttggtatgtttggtttgatttagatttctaaggaaaaaaatt |
47522964 |
T |
|
| Q |
417 |
atgacttgttagggttaaatgtggtaaattttgcgattggattagtttaagcnnnnnnnnttcagattgnnnnnnntaataatcatggattggtatattt |
516 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
47522965 |
atgacttgttagggttaaatgtggtatattttgtgattggattagtttaagcaaaaaaaattcagattgaaaaaaataataatcatggattggtatattt |
47523064 |
T |
|
| Q |
517 |
aagtgtaatggagaaga-tttagatttgagtttacaatgtttgaaattatgggtga |
571 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
47523065 |
aagtgtaatggagaagattttagatttgagtttacaatgtttgaaattatgggtga |
47523120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 629 - 744
Target Start/End: Original strand, 47523178 - 47523292
Alignment:
| Q |
629 |
catacattacattttttgcgagagataatgatgtatcaactgtttagttctagctatatggtttgctagtgaattatgtaaagaattgagtttttgttga |
728 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
47523178 |
catacattacattttttgcgagagataatgatgtatcaactgtttagttctagctatatgg-ttgctagtgaattatgtaaagaattgagtttttgttga |
47523276 |
T |
|
| Q |
729 |
tgttgtcgtcgtcgtc |
744 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
47523277 |
tgttgtcgtcgtcgtc |
47523292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 9e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 6896930 - 6896647
Alignment:
| Q |
18 |
gtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaa |
117 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||| || |
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| T |
6896930 |
gtgataaaggatgggaatgtaaaggatggtcaatatattgttgtaatttaacaataactgattattttcaaacctatcaatttgagaatctgttttcaaa |
6896831 |
T |
|
| Q |
118 |
gcgaaactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactggg |
217 |
Q |
| |
|
| || | || |||||||||||||||||||||||||||||||| |||||||| | ||| || | |||| ||||| |||||||||||||| ||||| |
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|
| T |
6896830 |
aaggaatactccaattgctcatgctgttgggttttgggattatcattcttttattaatgcagcttctctttttgagcctttgggttttggtactactggt |
6896731 |
T |
|
| Q |
218 |
aataagactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaagatttttatttttagt |
301 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||| ||| |||||||| |
|
|
| T |
6896730 |
aataagactacacagatgatggagattgccgcttttctcggacacgttggaagcaaaacctcttgtaagatatttttttttagt |
6896647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 26714896 - 26715147
Alignment:
| Q |
38 |
aaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcgaaactcgcccattgctc |
137 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||| || |||| |
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|
| T |
26714896 |
aaaggttggtcgatttattatttaaatttaacgataactgattattttcaaacctatcaattcgagaatttgttttcaaagcaaaactcgttgatagctc |
26714995 |
T |
|
| Q |
138 |
atgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaataagactttgaagatgat |
237 |
Q |
| |
|
| |||||| |||| ||||||||| ||| ||||||| || | | |||| || ||||||||||||||||| ||||||||||| | ||| |||||| |
|
|
| T |
26714996 |
a---tgttggttttttggattatcattctattataaccaccacatcactttttgatccattgggttttggtactactgggaataatagtttacagatgac |
26715092 |
T |
|
| Q |
238 |
ggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaagattttt |
292 |
Q |
| |
|
|||||| || ||||||| ||| ||| | ||||||||||||||| |||| ||||| |
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|
| T |
26715093 |
ggagatcgctgcatttcatgggcacatcagtagcaaaacctcttctaagtttttt |
26715147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 26984635 - 26984886
Alignment:
| Q |
38 |
aaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcgaaactcgcccattgctc |
137 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||| || |||| |
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|
| T |
26984635 |
aaaggttggtcgatttattatttaaatttaacgataactgattattttcaaacctatcaattcgagaatttgttttcaaagcaaaactcgttgatagctc |
26984734 |
T |
|
| Q |
138 |
atgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaataagactttgaagatgat |
237 |
Q |
| |
|
| |||||| |||| ||||||||| ||| ||||||| || | | |||| || ||||||||||||||||| ||||||||||| | ||| |||||| |
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|
| T |
26984735 |
a---tgttggttttttggattatcattctattataaccaccacatcactttttgatccattgggttttggtactactgggaataatagtttacagatgac |
26984831 |
T |
|
| Q |
238 |
ggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaagattttt |
292 |
Q |
| |
|
|||||| || ||||||| ||| ||| | ||||||||||||||| |||| ||||| |
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|
| T |
26984832 |
ggagatcgctgcatttcatgggcacatcagtagcaaaacctcttctaagtttttt |
26984886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 26714694 - 26714430
Alignment:
| Q |
18 |
gtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaa-tttaaccataactgattatcttcaaacctatcaattcgagaatctgttttcca |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||| | |||| || |||||| ||||| | |||| ||||||| |||||||| |||||||| ||| | |
|
|
| T |
26714694 |
gtgaaaaaggctgggaatgtaaaggttggttgatttttcgttgtaattttaacgataaccggttattttcaaacatatcaattagagaatcttattttga |
26714595 |
T |
|
| Q |
117 |
agcgaaactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgg |
216 |
Q |
| |
|
|| |||||||| || ||||||| ||| |||||| ||| ||| |||||||||| ||||| || ||||||||||||| ||||||||||| |||| |
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|
| T |
26714594 |
agtaaaactcgctgatagctcatgtctttgttttttggaattctcattcttttataatcgccgcatcgtttttcgagccatt-ggttttggtacgactga |
26714496 |
T |
|
| Q |
217 |
gaataagactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaa |
285 |
Q |
| |
|
|||| ||||| |||| || |||||||| |||||||||| ||| | | | ||||||||| |||||| |
|
|
| T |
26714495 |
gaat---cctttgcagattattgagattgcttcatttcttggacacatcgatggcaaaaccttttgtaa |
26714430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 26984433 - 26984169
Alignment:
| Q |
18 |
gtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaa-tttaaccataactgattatcttcaaacctatcaattcgagaatctgttttcca |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||| | |||| || |||||| ||||| | |||| ||||||| |||||||| |||||||| ||| | |
|
|
| T |
26984433 |
gtgaaaaaggctgggaatgtaaaggttggttgatttttcgttgtaattttaacgataaccggttattttcaaacatatcaattagagaatcttattttga |
26984334 |
T |
|
| Q |
117 |
agcgaaactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgg |
216 |
Q |
| |
|
|| |||||||| || ||||||| ||| |||||| ||| ||| |||||||||| ||||| || ||||||||||||| ||||||||||| |||| |
|
|
| T |
26984333 |
agtaaaactcgctgatagctcatgtctttgttttttggaattctcattcttttataatcgccgcatcgtttttcgagccatt-ggttttggtacgactga |
26984235 |
T |
|
| Q |
217 |
gaataagactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacctcttgtaa |
285 |
Q |
| |
|
|||| ||||| |||| || |||||||| |||||||||| ||| | | | ||||||||| |||||| |
|
|
| T |
26984234 |
gaat---cctttgcagattattgagattgcttcatttcttggacacatcgatggcaaaaccttttgtaa |
26984169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 13274772 - 13274818
Alignment:
| Q |
18 |
gtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaat |
64 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
13274772 |
gtgacaaagggtgggaatgtaaaggttggtcagtgtattgttgcaat |
13274818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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