View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_40 (Length: 300)
Name: NF19726_low_40
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 8034653 - 8034504
Alignment:
| Q |
3 |
aaaccttaagatgagttttgctattaagacttaagcatatgagaaaagcccaaatcaaaatactaattcattaggtggaagagcctatcgacttctataa |
102 |
Q |
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| T |
8034653 |
aaaccttaagatgagttttgccattaagacttaagcatatgagaaaagtccaaatcaaaatactaattcattaggtggaagagcctatcgacttctataa |
8034554 |
T |
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| Q |
103 |
tgattgtatagcttcaccgattgatatagacaatattagatatagaacac |
152 |
Q |
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| T |
8034553 |
tgattgtatagcttcaccgattaatatagacaatattagatatagaacac |
8034504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 8032863 - 8032724
Alignment:
| Q |
145 |
tagaacacgtatttatacttctaagccaagaagtataaatacggtcatatgatattgatttggcttttggtagcgtaagaaaaaggaagcctagcagtac |
244 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
8032863 |
tagaacacatatttatacttctaagccaagaagtataaatacggtcatatgatattgatttggcttttggtagcgcaagaaaaaggaagcctagcggtac |
8032764 |
T |
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| Q |
245 |
aattatattgttgtgattgaaatgaaacttctaagccaag |
284 |
Q |
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| T |
8032763 |
aattatattgttgtgattgaaatgaaacttctaagccaag |
8032724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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