View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_45 (Length: 283)
Name: NF19726_low_45
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 8707741 - 8707569
Alignment:
| Q |
1 |
cacatggccttacaatgatgcaacttacaatgaaacaaagttcgtcttgatagagacattttaaattcatcaa-caaaataaatttatttaccttcaata |
99 |
Q |
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| T |
8707741 |
cacatggccttacaatgatgcaacttacagtgaaacaaagttcgtcttgaaagagacattctaaattcatcaaacaaaataaatttatttaccttcaata |
8707642 |
T |
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| Q |
100 |
ttcacattgtgcaaactttaagaccctaaattgatcgtcaaattaatccctcaaacatttaaatgtcatcaca |
172 |
Q |
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| T |
8707641 |
ttcacattgtgcaaattataagaccctaaattgatcgccaaattaatcaaacaaacatttaaatgtcatcaca |
8707569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 8692748 - 8692637
Alignment:
| Q |
1 |
cacatggccttacaatgatgcaacttacaatgaaacaaagttcgtcttgatagagacattttaaattcatc-aacaaaat-aaatttatttaccttcaat |
98 |
Q |
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| T |
8692748 |
cacatggccttacaatgatgcaacttacaatgaaagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaat |
8692649 |
T |
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| Q |
99 |
attcacattgtg |
110 |
Q |
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| T |
8692648 |
gttcacattgtg |
8692637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 8699359 - 8699280
Alignment:
| Q |
167 |
atcacaactgtctttacagaaaactatagtgat---atagaaggacaaatttggctactacattgtatcttttataagct |
243 |
Q |
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| T |
8699359 |
atcacaattgtctttacagaaaactaaagtggtgagatggaaggacaaatttggctactactttgtatcttttataagct |
8699280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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