View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_46 (Length: 282)
Name: NF19726_low_46
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_46 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 3854900 - 3855038
Alignment:
| Q |
137 |
gttgttgttaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataa |
236 |
Q |
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| T |
3854900 |
gttgttgctaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaac----- |
3854994 |
T |
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| Q |
237 |
tgataataatattcctcatcctcttttctcaaagctaagctccaca |
282 |
Q |
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| T |
3854995 |
-gacaataatattcctcatcctc-tttctcaaagctaagctccaca |
3855038 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3854776 - 3854833
Alignment:
| Q |
1 |
caaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcc |
58 |
Q |
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| T |
3854776 |
caaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 4141730 - 4141638
Alignment:
| Q |
145 |
taatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataat |
237 |
Q |
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| T |
4141730 |
taatatgatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataat |
4141638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4141881 - 4141819
Alignment:
| Q |
1 |
caaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcctccga |
63 |
Q |
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| T |
4141881 |
caaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcctccga |
4141819 |
T |
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