View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_47 (Length: 280)
Name: NF19726_low_47
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 11834579 - 11834821
Alignment:
| Q |
24 |
gcataatgtgggcgaaaagtaacttaagcggcaaaacctttaggaaatcattttcggcaaaacgccctgcgagaattccaatgaagagtaggattgaagt |
123 |
Q |
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|||||||| | |||||||||||||||||||||||| |||||||||||| ||||| ||| |||| | | ||||||||||||||||| ||||||||||| |
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| T |
11834579 |
gcataatgagagcgaaaagtaacttaagcggcaaagactttaggaaatccttttctgcataacgtgccgttagaattccaatgaagaggaggattgaagt |
11834678 |
T |
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| Q |
124 |
tgaggaagtgaaaagagatattgcatctgctattataaacacgttaaatgttttgtcattcaagaaaaggggaattccactgttttcattgtttccacca |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| |
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| T |
11834679 |
tgaggaagtgaaaagagatattgcatctgctattataaaaacattaaatgttttgtccttcaagaagaggggaattccactgtcttgattgtttccacca |
11834778 |
T |
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| Q |
224 |
gggactgtgaaagctgcagcaaacatgatggttgtgatgagtg |
266 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11834779 |
gggacagtgaaagctgcagcaaacatgatggttgtgatgagtg |
11834821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 34 - 266
Target Start/End: Original strand, 11754231 - 11754463
Alignment:
| Q |
34 |
ggcgaaaagtaacttaagcggcaaaacctttaggaaatcattttcggcaaaacgccctgcgagaattccaatgaagagtaggattgaagttgaggaagtg |
133 |
Q |
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||||||| |||||||||||||||| |||||||||||| ||||| ||||||||| ||| |||||||||||||||||| |||| ||||||||| |||||| |
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| T |
11754231 |
ggcgaaacataacttaagcggcaaagactttaggaaatccttttctgcaaaacgcgctgtgagaattccaatgaagagaaggactgaagttgatgaagtg |
11754330 |
T |
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| Q |
134 |
aaaagagatattgcatctgctattataaacacgttaaatgttttgtcattcaagaaaaggggaattccactgttttcattgtttccaccagggactgtga |
233 |
Q |
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| T |
11754331 |
aaaagagatattgcatctgctattataaacacattaaacattttgtcctttaagaagaggggaattccactgtcttgattgtttccaccagggacagtga |
11754430 |
T |
|
| Q |
234 |
aagctgcagcaaacatgatggttgtgatgagtg |
266 |
Q |
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| T |
11754431 |
aagctgcagcaaacatgatggttgtgataagtg |
11754463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 65 - 266
Target Start/End: Complemental strand, 11748334 - 11748133
Alignment:
| Q |
65 |
aggaaatcattttcggcaaaacgccctgcgagaattccaatgaagagtaggattgaagttgaggaagtgaaaagagatattgcatctgctattataaaca |
164 |
Q |
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|||||||| ||||| ||| ||||| ||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11748334 |
aggaaatccttttcagcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaagtgaaaagagatattgcatctgctattataaaca |
11748235 |
T |
|
| Q |
165 |
cgttaaatgttttgtcattcaagaaaaggggaattccactgttttcattgtttccaccagggactgtgaaagctgcagcaaacatgatggttgtgatgag |
264 |
Q |
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| |||||||| ||||||| |||||| |||||||||||||||| || |||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
11748234 |
cattaaatgtattgtcatgcaagaagaggggaattccactgtcttgattgtttccaccagggacagtgaaagctgcagcgaacatgatggttgtgatgag |
11748135 |
T |
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| Q |
265 |
tg |
266 |
Q |
| |
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|| |
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|
| T |
11748134 |
tg |
11748133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 24 - 264
Target Start/End: Original strand, 11751121 - 11751361
Alignment:
| Q |
24 |
gcataatgtgggcgaaaagtaacttaagcggcaaaacctttaggaaatcattttcggcaaaacgccctgcgagaattccaatgaagagtaggattgaagt |
123 |
Q |
| |
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|||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| | || |||||| |
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| T |
11751121 |
gcataacgagggcgaaaagtaacttaagaggcacggactttaggaaatcattttcggcaaaactccctgtgagaattccaatgaagagaatgactgaagt |
11751220 |
T |
|
| Q |
124 |
tgaggaagtgaaaagagatattgcatctgctattataaacacgttaaatgttttgtcattcaagaaaaggggaattccactgttttcattgtttccacca |
223 |
Q |
| |
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|| |||||||||||||| |||||||||||||| || ||||| |||||| ||||| | | |||||| | ||||||||||||| || ||| ||||||||| |
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| T |
11751221 |
tgcagaagtgaaaagagaaattgcatctgctatgatgaacacattaaatattttgccttgcaagaagataggaattccactgtcttgattttttccacca |
11751320 |
T |
|
| Q |
224 |
gggactgtgaaagctgcagcaaacatgatggttgtgatgag |
264 |
Q |
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| T |
11751321 |
gggactgtgaaagctgcagcaaacatgatagtagtgatgag |
11751361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 11790374 - 11790602
Alignment:
| Q |
36 |
cgaaaagtaacttaagcggcaaaacctttaggaaatcattttcggcaaaacgccctgcgagaattccaatgaagagtaggattgaagttgaggaagtgaa |
135 |
Q |
| |
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|||| ||||||||||| |||||| ||||| |||||| || || ||| ||||| | | || |||||||||||||| |||| ||||||||| |||||||| |
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| T |
11790374 |
cgaagagtaacttaagtggcaaagactttaagaaatccttctctgcataacgcgccgtaaggattccaatgaagagaaggactgaagttgaagaagtgaa |
11790473 |
T |
|
| Q |
136 |
aagagatattgcatctgctattataaacacgttaaatgttttgtcattcaagaaaaggggaattccactgttttcattgtttccaccagggactgtgaaa |
235 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| | ||||| ||||| | |||||||||||||| || |||||||||||||||||| |||||| |
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| T |
11790474 |
aagagatattgcatctgctattataaacacattaaatgtgtagtcatgtaagaacaagggaattccactgtcttgattgtttccaccagggacagtgaaa |
11790573 |
T |
|
| Q |
236 |
gctgcagcaaacatgatggttgtgatgag |
264 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11790574 |
gctgcagcaaacatgatggttgtgatgag |
11790602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 266
Target Start/End: Original strand, 11882265 - 11882433
Alignment:
| Q |
98 |
attccaatgaagagtaggattgaagttgaggaagtgaaaagagatattgcatctgctattataaacacgttaaatgttttgtcattcaagaaaaggggaa |
197 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||| |||||| | | |||||| |||| | |||||| | ||||| |
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| T |
11882265 |
attccaatgaagagaaggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacgcatcaaatgtgatgtcgtgcaagaacaagggaa |
11882364 |
T |
|
| Q |
198 |
ttccactgttttcattgtttccaccagggactgtgaaagctgcagcaaacatgatggttgtgatgagtg |
266 |
Q |
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|||| ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11882365 |
ctccattgtcttgattgtttccaccagggacagtgaaagctgcagcaaacatgatggttgtgatgagtg |
11882433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 12008668 - 12008719
Alignment:
| Q |
215 |
tttccaccagggactgtgaaagctgcagcaaacatgatggttgtgatgagtg |
266 |
Q |
| |
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|||||||| ||||| || || |||||||||||||||||||| |||||||||| |
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| T |
12008668 |
tttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagtg |
12008719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 6106178 - 6106125
Alignment:
| Q |
211 |
attgtttccaccagggactgtgaaagctgcagcaaacatgatggttgtgatgag |
264 |
Q |
| |
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||||||||| || || || |||||||||||||||||||||||||| ||||||| |
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|
| T |
6106178 |
attgtttcctcctggaacagtgaaagctgcagcaaacatgatggtaatgatgag |
6106125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 6858646 - 6858690
Alignment:
| Q |
211 |
attgtttccaccagggactgtgaaagctgcagcaaacatgatggt |
255 |
Q |
| |
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||||||||| || || || |||||||||||||||||||||||||| |
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| T |
6858646 |
attgtttcctcctggaacagtgaaagctgcagcaaacatgatggt |
6858690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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