View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19726_low_5 (Length: 740)

Name: NF19726_low_5
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19726_low_5
NF19726_low_5
[»] chr6 (2 HSPs)
chr6 (172-723)||(26262724-26263267)
chr6 (8-109)||(26262557-26262659)
[»] chr7 (5 HSPs)
chr7 (410-464)||(24622648-24622702)
chr7 (418-464)||(30018248-30018294)
chr7 (409-462)||(31718946-31718999)
chr7 (403-453)||(47872982-47873032)
chr7 (409-462)||(23681802-23681855)
[»] chr8 (1 HSPs)
chr8 (419-460)||(9090967-9091008)
[»] chr4 (3 HSPs)
chr4 (411-455)||(6122141-6122185)
chr4 (411-453)||(21765502-21765544)
chr4 (419-473)||(31977459-31977513)
[»] chr1 (2 HSPs)
chr1 (408-468)||(15338052-15338112)
chr1 (399-454)||(27925355-27925410)
[»] chr3 (1 HSPs)
chr3 (410-448)||(29209725-29209763)
[»] chr2 (2 HSPs)
chr2 (411-445)||(28829745-28829779)
chr2 (411-465)||(42039113-42039167)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 172 - 723
Target Start/End: Original strand, 26262724 - 26263267
Alignment:
Q  172 cgatctagcaaatttcattttcatattttaccaacgcaaagaagaaaatgacgattatggagaacaatagtacatttcttc------------------- 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||                       
T  26262724 cgatctagcaaatttcattttcatattttaccaacgcaaagaagaaaatgacaattatggagaataatagtacatttcttcaaccagagtacatttcttc 26262823  T
Q  253 tttgcgttgataaaatatgttgcaaccatagtacatttctttagttgctttctgtaacgttcttcgctttaatgtttcgtccaacatgcatgcatatgta 352  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  26262824 tttgccttggtaaaatatgttgcaaccatactacatttctttagttgctttctataacgttcttcgctttaaagtttcgtccaacatgcatgcatatgta 26262923  T
Q  353 aactattattcttgtactaagcataagtctcttttatactattaattcaataaagctcatcatatttcattttatttaatgataaaatttattgattcaa 452  Q
    |||||||||| |||                      |||||||||||||||||| ||||||||||||||||| ||     ||||||||||||| ||||||    
T  26262924 aactattatttttg----------------------tactattaattcaataaatctcatcatatttcatttcat-----gataaaatttattaattcaa 26262996  T
Q  453 tgataaaaacaatcttgtgtatcttatcattcttgtgtaccataacttgaccacactttaaatatagctcggtagtaagagcttatatttgtaattttaa 552  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26262997 tggtaaaaacaatcttgtgtatcttatcattcttgtgtaccataacttgaccacactttaaatatagctcggtagtaagagcttatatttgtaattttaa 26263096  T
Q  553 gttgctgcgttcatttcaataaaatgataatttgtgtcttttcaataagtaacttcttgccattcctcaattatttttaaccaaaaagattcataaataa 652  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  26263097 gttggcgcgttcatttcaataaaatgataatttgtgtcttttcaataagtaactttttaccattcctcaattatttttaaccaaaaagattcataaataa 26263196  T
Q  653 ccaacatattttttcttctaagttcgttataacgcaaaaatgcattttaaacaaataacaaacaacataaa 723  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26263197 ccaacattttttttcttctaagttcgttataacgcaaaaatgcattttaaacaaataacaaacaacataaa 26263267  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 26262557 - 26262659
Alignment:
Q  8 cgaagaatatactactagagattccagattcgtgttgtagaaaagagaataatgtttcaaacaaataatatgagg-taataatagcagggttttttgtac 106  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  26262557 cgaacaatatactacttgagattccagattcgtgttgtagaaaagagaataatgtttcaaacaaataatatgaggttaataatagcaggggtttttgtac 26262656  T
Q  107 cag 109  Q
    |||    
T  26262657 cag 26262659  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 24622648 - 24622702
Alignment:
Q  410 catcatatttcattttatttaatgataaaatttattgattcaatgataaaaacaa 464  Q
    |||||||| |||||| |||||||||||||||||||||||| ||| ||| ||||||    
T  24622648 catcatatctcatttaatttaatgataaaatttattgatttaataatacaaacaa 24622702  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 30018294 - 30018248
Alignment:
Q  418 ttcattttatttaatgataaaatttattgattcaatgataaaaacaa 464  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  30018294 ttcatttaatttaatgataaaatttattgactcaataataaaaacaa 30018248  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 462
Target Start/End: Original strand, 31718946 - 31718999
Alignment:
Q  409 tcatcatatttcattttatttaatgataaaatttattgattcaatgataaaaac 462  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| |||| |||||    
T  31718946 tcatcatatttcatttgatttaatggtaagatttattgattcagtgatgaaaac 31718999  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 47873032 - 47872982
Alignment:
Q  403 taaagctcatcatatttcattttatttaatgataaaatttattgattcaat 453  Q
    |||| ||||||||||||||||| |||||||  ||||||||||||| |||||    
T  47873032 taaatctcatcatatttcatttaatttaatagtaaaatttattgactcaat 47872982  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 462
Target Start/End: Complemental strand, 23681855 - 23681802
Alignment:
Q  409 tcatcatatttcattttatttaatgataaaatttattgattcaatgataaaaac 462  Q
    |||||||||||||||| ||||||| || | |||||||||| |||| ||||||||    
T  23681855 tcatcatatttcatttgatttaataatgatatttattgatccaataataaaaac 23681802  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 9090967 - 9091008
Alignment:
Q  419 tcattttatttaatgataaaatttattgattcaatgataaaa 460  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  9090967 tcatttaatttaaggataaaatttattgattcaatgataaaa 9091008  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 6122185 - 6122141
Alignment:
Q  411 atcatatttcattttatttaatgataaaatttattgattcaatga 455  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||    
T  6122185 atcatatttcatttaatttaatggtaaaatttattgatttaatga 6122141  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 453
Target Start/End: Original strand, 21765502 - 21765544
Alignment:
Q  411 atcatatttcattttatttaatgataaaatttattgattcaat 453  Q
    |||||||||||||| || ||||||| |||||||||||||||||    
T  21765502 atcatatttcatttaatctaatgatgaaatttattgattcaat 21765544  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 473
Target Start/End: Original strand, 31977459 - 31977513
Alignment:
Q  419 tcattttatttaatgataaaatttattgattcaatgataaaaacaatcttgtgta 473  Q
    |||||| |||||||||| | |||||||||| ||||||||||||| | ||||||||    
T  31977459 tcatttgatttaatgatgagatttattgatccaatgataaaaactaacttgtgta 31977513  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 15338052 - 15338112
Alignment:
Q  408 ctcatcatatttcattttatttaatgataaaatttattgattcaatgataaaaacaatctt 468  Q
    |||||||||||| |||| ||  ||||||||||||||||||| |||| ||||||| ||||||    
T  15338052 ctcatcatatttaatttcatccaatgataaaatttattgatccaattataaaaataatctt 15338112  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 27925355 - 27925410
Alignment:
Q  399 tcaataaagctcatcatatttcattttatttaatgataaaatttattgattcaatg 454  Q
    |||||||| | |||||||| |||||||||||||| || |||||||||||| |||||    
T  27925355 tcaataaatcacatcatatctcattttatttaatcatgaaatttattgatccaatg 27925410  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 29209725 - 29209763
Alignment:
Q  410 catcatatttcattttatttaatgataaaatttattgat 448  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  29209725 catcatattttattttatttaatgataaagtttattgat 29209763  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 28829779 - 28829745
Alignment:
Q  411 atcatatttcattttatttaatgataaaatttatt 445  Q
    |||||||| ||||||||||||||||||||||||||    
T  28829779 atcatattccattttatttaatgataaaatttatt 28829745  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 42039167 - 42039113
Alignment:
Q  411 atcatatttcattttatttaatgataaaatttattgattcaatgataaaaacaat 465  Q
    ||||| |||||||| |||||| | ||||||||||||||  |||||||||||||||    
T  42039167 atcatgtttcatttgatttaacggtaaaatttattgatctaatgataaaaacaat 42039113  T

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