View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19726_low_50 (Length: 276)
Name: NF19726_low_50
Description: NF19726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19726_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 8522379 - 8522210
Alignment:
| Q |
1 |
aatgaggaggaaccaaagttcaatcacaaatcagaatcagaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgtctgttg |
100 |
Q |
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| T |
8522379 |
aatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaattattttctcttttgtctgttg |
8522280 |
T |
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| Q |
101 |
ggtttttactttctgttaaaacaagcttgactcttttgatctagttagtttgattttcagttgtaagttt |
170 |
Q |
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| T |
8522279 |
ggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagttt |
8522210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 8522187 - 8522147
Alignment:
| Q |
171 |
gtgcatgccacaagatgtgttatataataaaattccaagtt |
211 |
Q |
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| T |
8522187 |
gtgcatgccacaagttgtgttatataataaaattccaagtt |
8522147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 42116971 - 42116886
Alignment:
| Q |
29 |
aatcagaatcagaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgtctgttgggtttttactttct |
114 |
Q |
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| T |
42116971 |
aatcagaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttct |
42116886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 42122729 - 42122646
Alignment:
| Q |
34 |
gaatcagaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgtctgttgggtttttactttctgtt |
117 |
Q |
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| T |
42122729 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtt |
42122646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 42128124 - 42128044
Alignment:
| Q |
34 |
gaatcagaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgtctgttgggtttttactttct |
114 |
Q |
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| T |
42128124 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttct |
42128044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 42116846 - 42116804
Alignment:
| Q |
170 |
tgtgcatgccacaagatgtgttatataataaaattccaagttt |
212 |
Q |
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| T |
42116846 |
tgtgcatgccacaagatgtgttatataataaaattccaagttt |
42116804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 34241407 - 34241466
Alignment:
| Q |
40 |
gaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgtctgtt |
99 |
Q |
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| T |
34241407 |
gaatcagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgtt |
34241466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 34233634 - 34233688
Alignment:
| Q |
40 |
gaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgt |
94 |
Q |
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| T |
34233634 |
gaatcagatggtgcaaatgtcatagttttattattctggttattttctctattgt |
34233688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 11117386 - 11117289
Alignment:
| Q |
34 |
gaatcagaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgtctgttgggtttttactttctg-ttaaaacaagcttga |
130 |
Q |
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| T |
11117386 |
gaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaataagcttga |
11117289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 25523879 - 25523943
Alignment:
| Q |
29 |
aatcagaatcagaatcagatggtgcaaatgtcgtagttttattgttgtatttattttctcttttgt |
94 |
Q |
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| T |
25523879 |
aatcagaatcagaatcagatgatgcaaatgtcatag-tttattgttttagttattttctcttttgt |
25523943 |
T |
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